Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1380 ATGGCCGGTTTCTTCTCACTAGGCGGCGGAAACGGCGGAAACGACCATCAACAAAACAACAACAACAACTTATTTTGGTACAAGAATTATGAGGGTTTTGGAATATGGCAGCAACAACAACAACAACAACAAGAAACGGGGTTTTTTGATTCATCGGCAGCTGTGGTGGGTCCTAGTCGAAGTTCTGATGAACAGCCGTCGTTGACGGTGGTGAGATCGGGGAGAGGCGATGGCGGAGGAGATGGAGATGGAGATGGCCGTGCAATGATGAGTTGTCAAGATTGTGGAAATCAAGCGAAGAAGGATTGTATTCATATGAGATGTAGGACTTGTTGTAAGAGCCGTGGGTTAGATTGTCAAACTCATATTAAAAGTACTTGGGTTCCGGCGGCCAAACGCCGGGAGCGCCACCACCAGCAACTTCCTCTCCGCCGTGGAATCAACCCCAAACGGCTGAGAGAGATTAACCCATCAGCTACCACTTCTTTAGGGTTGGAAATGGGGAATTTGCCAGGAGAAGTGAGTTCTTCAGCAGTGTTTCGATGTGTAAGAATGACATCTTTAGATGAAGAAGGTGATGATCAATATGCATATCAAACGGCTGTTAACATAGGAGGTCATGTCTTCAAAGGCATTCTCTACGACCACGGCCCGGCTGATCACGCCGCCTCCTCTTCAGGCGACGGTATTTCAACGCTCAACTCTGTCACCGTTGCCGCATTACCGATTACGAGTGGTAGCGGTGGACCGACATCGGAGTCGTCTATGATGAACGCCGGGATGCTGCATCATTCAGTATATCCAAGTCCTCTCAACAGCTTCATGGCAGCTGGTACGCAATTTTTTCTGCCCCCAAGATCTTAG 864 48.73 MAGFFSLGGGNGGNDHQQNNNNNLFWYKNYEGFGIWQQQQQQQQETGFFDSSAAVVGPSRSSDEQPSLTVVRSGRGDGGGDGDGDGRAMMSCQDCGNQAKKDCIHMRCRTCCKSRGLDCQTHIKSTWVPAAKRRERHHQQLPLRRGINPKRLREINPSATTSLGLEMGNLPGEVSSSAVFRCVRMTSLDEEGDDQYAYQTAVNIGGHVFKGILYDHGPADHAASSSGDGISTLNSVTVAALPITSGSGGPTSESSMMNAGMLHHSVYPSPLNSFMAAGTQFFLPPRS 287
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 41715609 41716819 + evm.model.ptg000021l.1380 HCH13g1380 557885
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1380 287 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 281 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
HCH13g1380 287 NCBIfam LRP1 C-terminal domain 170 218 IPR006511 -
HCH13g1380 287 MobiDBLite consensus disorder prediction 41 69 - -
HCH13g1380 287 MobiDBLite consensus disorder prediction 41 85 - -
HCH13g1380 287 Pfam Domain of unknown function (DUF702) 90 219 - -
HCH13g1380 287 NCBIfam putative zinc finger domain, LRP1 type 91 133 IPR006510 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1380 HCH-Chr13:41715609 HCH4g0767 HCH-Chr4:4938508 7.40E-47 dispersed
HCH12g0159 HCH-Chr12:842367 HCH13g1380 HCH-Chr13:41715609 1.10E-43 wgd
HCH13g1380 HCH-Chr13:41715609 HCH14g0620 HCH-Chr14:34935639 2.20E-59 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32884 PF05142 DUF702 3.60E-55 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1380 K27807 - rcu:8277615 249.595