Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1380 | ATGGCCGGTTTCTTCTCACTAGGCGGCGGAAACGGCGGAAACGACCATCAACAAAACAACAACAACAACTTATTTTGGTACAAGAATTATGAGGGTTTTGGAATATGGCAGCAACAACAACAACAACAACAAGAAACGGGGTTTTTTGATTCATCGGCAGCTGTGGTGGGTCCTAGTCGAAGTTCTGATGAACAGCCGTCGTTGACGGTGGTGAGATCGGGGAGAGGCGATGGCGGAGGAGATGGAGATGGAGATGGCCGTGCAATGATGAGTTGTCAAGATTGTGGAAATCAAGCGAAGAAGGATTGTATTCATATGAGATGTAGGACTTGTTGTAAGAGCCGTGGGTTAGATTGTCAAACTCATATTAAAAGTACTTGGGTTCCGGCGGCCAAACGCCGGGAGCGCCACCACCAGCAACTTCCTCTCCGCCGTGGAATCAACCCCAAACGGCTGAGAGAGATTAACCCATCAGCTACCACTTCTTTAGGGTTGGAAATGGGGAATTTGCCAGGAGAAGTGAGTTCTTCAGCAGTGTTTCGATGTGTAAGAATGACATCTTTAGATGAAGAAGGTGATGATCAATATGCATATCAAACGGCTGTTAACATAGGAGGTCATGTCTTCAAAGGCATTCTCTACGACCACGGCCCGGCTGATCACGCCGCCTCCTCTTCAGGCGACGGTATTTCAACGCTCAACTCTGTCACCGTTGCCGCATTACCGATTACGAGTGGTAGCGGTGGACCGACATCGGAGTCGTCTATGATGAACGCCGGGATGCTGCATCATTCAGTATATCCAAGTCCTCTCAACAGCTTCATGGCAGCTGGTACGCAATTTTTTCTGCCCCCAAGATCTTAG | 864 | 48.73 | MAGFFSLGGGNGGNDHQQNNNNNLFWYKNYEGFGIWQQQQQQQQETGFFDSSAAVVGPSRSSDEQPSLTVVRSGRGDGGGDGDGDGRAMMSCQDCGNQAKKDCIHMRCRTCCKSRGLDCQTHIKSTWVPAAKRRERHHQQLPLRRGINPKRLREINPSATTSLGLEMGNLPGEVSSSAVFRCVRMTSLDEEGDDQYAYQTAVNIGGHVFKGILYDHGPADHAASSSGDGISTLNSVTVAALPITSGSGGPTSESSMMNAGMLHHSVYPSPLNSFMAAGTQFFLPPRS | 287 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 41715609 | 41716819 | + | evm.model.ptg000021l.1380 | HCH13g1380 | 557885 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1380 | 287 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 281 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
| HCH13g1380 | 287 | NCBIfam | LRP1 C-terminal domain | 170 | 218 | IPR006511 | - | |
| HCH13g1380 | 287 | MobiDBLite | consensus disorder prediction | 41 | 69 | - | - | |
| HCH13g1380 | 287 | MobiDBLite | consensus disorder prediction | 41 | 85 | - | - | |
| HCH13g1380 | 287 | Pfam | Domain of unknown function (DUF702) | 90 | 219 | - | - | |
| HCH13g1380 | 287 | NCBIfam | putative zinc finger domain, LRP1 type | 91 | 133 | IPR006510 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1380 | HCH-Chr13:41715609 | HCH4g0767 | HCH-Chr4:4938508 | 7.40E-47 | dispersed | |
| HCH12g0159 | HCH-Chr12:842367 | HCH13g1380 | HCH-Chr13:41715609 | 1.10E-43 | wgd | |
| HCH13g1380 | HCH-Chr13:41715609 | HCH14g0620 | HCH-Chr14:34935639 | 2.20E-59 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32884 | PF05142 | DUF702 | 3.60E-55 | No_clan | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1380 | K27807 | - | rcu:8277615 | 249.595 |