Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1387 ATGGCTCAACCTTTGAGTTCTCTTTTTGTTCTTTTCCTCCTTGCCTTAACTCCAGTTTGTTTCACTCACAAGACGGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTTATCTCTATCCTCAATTCTATGACCATTCTTGCCCGAGAGCTCAAGAGATAGTCTATTCCATAGTGGCAAAGGCTTTTGCTAAAGAAGCTCGTATTGCTGCTTCTTTGCTCCGGCTTCATTTCCATGACTGTTTTGTGAAGGGGTGTGATGCTTCATTATTGTTAGATAGCAGTGGAAAAATAGCAAGTGAGAAGAGGTCAAATCCCAACAGGAACTCTGCAAGAGGGTTTGAAGTAATTGATGAAATCAAATCCGCATTGGAACAAGAATGCCCATACACTGTTTCTTGTGCTGATATCTTGGCTATTGCTGCTAGAGATTCTACTGTCATAACTGGTGGACCCGGGTGGGAGGTTCCATTGGGGAGAAGGGACTCGAGAGGAGCAAGTCTAAGTGGTTCTAACAATGACATTCCTGCTCCAAACAACACCTTCCAAACCATTCTCACTAAATTCAACAGAAAAGGCCTTGACATTGTTGATCTTGTTGCTCTTTCTGGAAGCCACACCATAGGGAATTCTCGATGCACCAGCTTCAGACAAAGGCTCTACAATCAAACAGGCAATGCCAAGCCCGATTTCTCCCTCGATCCATATTACGCCGCCGAATTGCGTAAACGATGCCCTAGATCCGGCGGCGATCAGAATCTCTTCTTCCTCGATTTCGTCTCTCCAACAAAATTCGATAATTACTATTTCAAGAACATTTTAGCTTCAAAAGGTTTACTCAATTCCGATCAAGTTCTTTTGACGAAGAATCAACAATCAGCTGATTTGGTGAAGAAATACGCAGAGGATTCTCAGCTTTTCTTTGATCAATTTGCCAAATCGATGGTTAAAATGGGAAATATTTCTCCTTTGACTGGTTCAAGAGGCGAAATTAGGAAAATTTGCAGGAGAGTTAACAAGAATTAG 1020 43.24 MAQPLSSLFVLFLLALTPVCFTHKTGGGGGGGGGGYLYPQFYDHSCPRAQEIVYSIVAKAFAKEARIAASLLRLHFHDCFVKGCDASLLLDSSGKIASEKRSNPNRNSARGFEVIDEIKSALEQECPYTVSCADILAIAARDSTVITGGPGWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFNRKGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQTGNAKPDFSLDPYYAAELRKRCPRSGGDQNLFFLDFVSPTKFDNYYFKNILASKGLLNSDQVLLTKNQQSADLVKKYAEDSQLFFDQFAKSMVKMGNISPLTGSRGEIRKICRRVNKN 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41797116 41799498 - evm.model.ptg000021l.1387 HCH13g1387 557892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1387 339 ProSiteProfiles Plant heme peroxidase family profile. 36 337 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 Gene3D - 41 337 - -
HCH13g1387 339 SUPERFAMILY Heme-dependent peroxidases 37 337 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 196 206 IPR019793 -
HCH13g1387 339 CDD secretory_peroxidase 37 336 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g1387 339 FunFam Peroxidase 174 316 - -
HCH13g1387 339 ProSitePatterns Peroxidases active site signature. 68 79 IPR019794 GO:0004601(InterPro)
HCH13g1387 339 Gene3D Peroxidase, domain 2 174 317 - -
HCH13g1387 339 PRINTS Haem peroxidase superfamily signature 68 82 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Haem peroxidase superfamily signature 256 271 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Haem peroxidase superfamily signature 148 160 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Haem peroxidase superfamily signature 130 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 195 207 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 70 90 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 129 139 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 46 65 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 254 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 270 287 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 PRINTS Plant peroxidase signature 148 163 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 FunFam Peroxidase 40 182 - -
HCH13g1387 339 PANTHER PEROXIDASE 72-RELATED 12 336 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1387 339 Pfam Peroxidase 53 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1387 HCH-Chr13:41797116 HCH4g0752 HCH-Chr4:4843382 1.00E-111 dispersed
HCH5g0300 HCH-Chr5:1873911 HCH13g1387 HCH-Chr13:41797116 4.50E-88 transposed
HCH13g1387 HCH-Chr13:41797116 HCH14g0610 HCH-Chr14:34853882 3.10E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1387 K00430 - csv:101223204 565.074