Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1391 ATGGCAACTCTTGTTGAGCCACCAAAAGGAATGAGGCCTAATGGGAAGCATTATTACTCAATGTGGAAAACTTTATTTGAGATTGATACAAAGTATGTTCCAATTAAACCAATAGGAAGAGGAGCTTATGGTGTTGTTTGCTCTTCGATCAACCGAGAAACCGATGAGAGAGTTGCGATCAAGAAGATCAACAATGTGTTTGAAAACCGGACTGATGCATTGAGAACATTGCGGGAGTTGAAGCTTCTTAGACATATAAAGCATGAGAATGTGATTGCTTTGAAGGATGTTATGATGCCTATTCATAGGAGCTTTAAGGATGTGTATTTGGTTTACGAGCTCATGGATACCGATCTTCATCAGATTATCAAGTCCTCACAGCCCCTTTCGAGTGATCATTGCAAGTATTTTATATTTCAGTTGCTTTGCGGATTGAAGTATCTTCACTCGGCCAACATTCTTCACCGAGATTTGAAGCCGGGGAACCTCTTAGTCAATGCTAACTGCGACTTGAAGATATGTGATTTCGGGTTGGCACGAACCAGCCAAGGCAACGGTGGATTCATGACAGAATATGTGGTAACCCGCTGGTATCGTGCACCTGAGCTTCTCCTGTGCTGTGACAACTACGGACCCTCCATCGATGTCTGGTCTGTTGGCTGCATCTTTGCTGAAATTCTTGGTCGAAAACCAATTTTCCCAGGCACGGACTGCCTCAACCAACTCAATTTGATCGTCAATGTTCTTGGCAGTCCACAGGAAGCTGATATTGAGTTTATTGACAATCCAAAGGCCAGAAAGTTTATCAGATCGCTTCCTTTTTCAAGAAAAACGCACTTTCCACATATATATCCTTACGCCGATCCCTTAGCTCTAGACTTGTTGAACAGGATGCTTGTTTTTGATCCAACAAAGAGAATCACTGTCACAGAAGCTCTTCAACATCCTTACATGTCCGATCTATATGACCCGAAATTCAATCCTCCTGCCCAAGGGCCGTTGAGTCTCGATATAGACGAAAATCTCGGGGAAAATATGATCAGAGAAATGATGTTGAATGAGATGCTCTATTACCATCCTGAAGCAGTTTCATCCTATTCTTAA 1104 42.39 MATLVEPPKGMRPNGKHYYSMWKTLFEIDTKYVPIKPIGRGAYGVVCSSINRETDERVAIKKINNVFENRTDALRTLRELKLLRHIKHENVIALKDVMMPIHRSFKDVYLVYELMDTDLHQIIKSSQPLSSDHCKYFIFQLLCGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSQGNGGFMTEYVVTRWYRAPELLLCCDNYGPSIDVWSVGCIFAEILGRKPIFPGTDCLNQLNLIVNVLGSPQEADIEFIDNPKARKFIRSLPFSRKTHFPHIYPYADPLALDLLNRMLVFDPTKRITVTEALQHPYMSDLYDPKFNPPAQGPLSLDIDENLGENMIREMMLNEMLYYHPEAVSSYS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41826303 41827966 - evm.model.ptg000021l.1391 HCH13g1391 557896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1391 367 Gene3D Phosphorylase Kinase; domain 1 19 349 - -
HCH13g1391 367 SMART serkin_6 32 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1391 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 356 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH13g1391 367 FunFam Mitogen-activated protein kinase 115 344 - -
HCH13g1391 367 FunFam Mitogen-activated protein kinase 18 125 - -
HCH13g1391 367 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
HCH13g1391 367 ProSitePatterns MAP kinase signature. 67 169 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1391 367 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524(InterPro)
HCH13g1391 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1391 367 ProSiteProfiles Protein kinase domain profile. 32 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1391 367 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1391 367 Gene3D Transferase(Phosphotransferase) domain 1 115 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1391 HCH-Chr13:41826303 HCH4g0746 HCH-Chr4:4811736 2.00E-166 dispersed
HCH13g1391 HCH-Chr13:41826303 HCH4g0122 HCH-Chr4:668730 1.20E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81209 PF00069 Pkinase 4.90E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1391 K20537 - rcu:8279136 653.284