Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0040 | ATGGGAGATGGCAACAACAACAACAGAGGTCTTATCTCGGCTTCTTCCAACAAAAAGCCGGAGTGGCTTCAACAATACGATCTAATTGGTAAGATCGGAGAGGGAACGTACGGTCTTGTATTCCTTGCCAAAATCAAACCGAGTCGTGGAAAATCCATTGCCATCAAGAAGTTTAAACAATCCAAGGACGGCGATGGTGTTTCCCCAACTGCTATCCGCGAAATTATGTTACTGCGGGAAATTTCACATGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCAGATATGTCACTGTACCTAGCTTTTGATTATGCCGAACATGATCTTTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCATTAATCAGTACACAGTTAAATCTTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTTCACAGTAATTGGATCATTCATCGTGACCTAAAGCCGTCAAATATTCTCGTTATGGGTGAAGGAGAAGAACAAGGAGTTGTTAAAATAGCTGATTTTGGACTTGCAAGAATATATCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGTGCACCTGAGCTCCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTTTTGACATTGAAGCCATTATTTCAAGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTAGACCAACTCGACAAAATTTTTAAGGTTTTAGGCCATCCCACACTAGAAAAGTGGCCAACCCTTGCTAATCTTCCACATTGGCAACAAGATTCACAGCACATACAAGGGCATAAATATGATAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTATCCAGAATGCTCGAATATGATCCTCGTAAGCGTATAACAGCAGCGCAAGCACTTGAGCATGAGTATTTCCGTATTGAGCCTCTACCAGGGTACAATGCTCTAGTTCCCATCCAACCTGGAGAGAAGGTGATTAATTATCCAACTCGTCCTGTGGACACAACCACGGATTTTGAGGGTACAACTAGCCTTCAACCCTCACAAATGGTATCATCCGGAAGTGCAGTTTCTGGAAGCATCCAAGGTGCTCATGTTATGGCAAATAGATCTCTCCCTCGGCAAATGGCAGGAGTTGGCATGCCAAGGATGCCACCGCAGGGCATGACAGCTTATAATCTTGCATCTCAGGCAGGAATGGGTGGTGGAATGAATCCGGGTGGCATCCCAATGCAGCGAGGTGTTTCTGCACAAGCCCATCAGCAACAACAGTTAAGGAGAAAAGATCCAGGAATGGGAATGACGGGGTATCCTCCACAGCAGAAATCAAGACGCTTCTGA | 1428 | 43.91 | MGDGNNNNRGLISASSNKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDSQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSRMLEYDPRKRITAAQALEHEYFRIEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTSLQPSQMVSSGSAVSGSIQGAHVMANRSLPRQMAGVGMPRMPPQGMTAYNLASQAGMGGGMNPGGIPMQRGVSAQAHQQQQLRRKDPGMGMTGYPPQQKSRRF | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 4110245 | 4128332 | - | evm.model.ptg000014l.1168 | HCH14g0040 | 557943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0040 | 475 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 105 | - | - | |
HCH14g0040 | 475 | PANTHER | CELL DIVISION PROTEIN KINASE | 25 | 334 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER) | |
HCH14g0040 | 475 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 345 | - | - | |
HCH14g0040 | 475 | SMART | serkin_6 | 26 | 334 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0040 | 475 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 151 | 163 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH14g0040 | 475 | Pfam | Protein kinase domain | 26 | 334 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0040 | 475 | CDD | STKc_CDK8_like | 25 | 334 | - | - | |
HCH14g0040 | 475 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 335 | IPR011009 | - | |
HCH14g0040 | 475 | ProSiteProfiles | Protein kinase domain profile. | 26 | 334 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0040 | 475 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 57 | IPR017441 | GO:0005524(InterPro) | |
HCH14g0040 | 475 | FunFam | Putative cyclin-dependent kinase E-1 | 108 | 347 | - | - | |
HCH14g0040 | 475 | MobiDBLite | consensus disorder prediction | 436 | 475 | - | - | |
HCH14g0040 | 475 | FunFam | Cyclin-dependent kinase e-1 | 14 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0040 | HCH-Chr14:4110245 | HCH1g1131 | HCH-Chr1:58817114 | 4.80E-67 | dispersed | |
HCH14g0040 | HCH-Chr14:4110245 | HCH4g0096 | HCH-Chr4:516201 | 1.50E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81212 | PF00069 | Pkinase | 1.30E-69 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0040 | K02208 | - | csv:101203984 | 862.062 |