Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0040 ATGGGAGATGGCAACAACAACAACAGAGGTCTTATCTCGGCTTCTTCCAACAAAAAGCCGGAGTGGCTTCAACAATACGATCTAATTGGTAAGATCGGAGAGGGAACGTACGGTCTTGTATTCCTTGCCAAAATCAAACCGAGTCGTGGAAAATCCATTGCCATCAAGAAGTTTAAACAATCCAAGGACGGCGATGGTGTTTCCCCAACTGCTATCCGCGAAATTATGTTACTGCGGGAAATTTCACATGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCAGATATGTCACTGTACCTAGCTTTTGATTATGCCGAACATGATCTTTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCATTAATCAGTACACAGTTAAATCTTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTTCACAGTAATTGGATCATTCATCGTGACCTAAAGCCGTCAAATATTCTCGTTATGGGTGAAGGAGAAGAACAAGGAGTTGTTAAAATAGCTGATTTTGGACTTGCAAGAATATATCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGTGCACCTGAGCTCCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTTTTGACATTGAAGCCATTATTTCAAGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTAGACCAACTCGACAAAATTTTTAAGGTTTTAGGCCATCCCACACTAGAAAAGTGGCCAACCCTTGCTAATCTTCCACATTGGCAACAAGATTCACAGCACATACAAGGGCATAAATATGATAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTATCCAGAATGCTCGAATATGATCCTCGTAAGCGTATAACAGCAGCGCAAGCACTTGAGCATGAGTATTTCCGTATTGAGCCTCTACCAGGGTACAATGCTCTAGTTCCCATCCAACCTGGAGAGAAGGTGATTAATTATCCAACTCGTCCTGTGGACACAACCACGGATTTTGAGGGTACAACTAGCCTTCAACCCTCACAAATGGTATCATCCGGAAGTGCAGTTTCTGGAAGCATCCAAGGTGCTCATGTTATGGCAAATAGATCTCTCCCTCGGCAAATGGCAGGAGTTGGCATGCCAAGGATGCCACCGCAGGGCATGACAGCTTATAATCTTGCATCTCAGGCAGGAATGGGTGGTGGAATGAATCCGGGTGGCATCCCAATGCAGCGAGGTGTTTCTGCACAAGCCCATCAGCAACAACAGTTAAGGAGAAAAGATCCAGGAATGGGAATGACGGGGTATCCTCCACAGCAGAAATCAAGACGCTTCTGA 1428 43.91 MGDGNNNNRGLISASSNKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDSQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSRMLEYDPRKRITAAQALEHEYFRIEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTSLQPSQMVSSGSAVSGSIQGAHVMANRSLPRQMAGVGMPRMPPQGMTAYNLASQAGMGGGMNPGGIPMQRGVSAQAHQQQQLRRKDPGMGMTGYPPQQKSRRF 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4110245 4128332 - evm.model.ptg000014l.1168 HCH14g0040 557943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0040 475 Gene3D Phosphorylase Kinase; domain 1 12 105 - -
HCH14g0040 475 PANTHER CELL DIVISION PROTEIN KINASE 25 334 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
HCH14g0040 475 Gene3D Transferase(Phosphotransferase) domain 1 106 345 - -
HCH14g0040 475 SMART serkin_6 26 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0040 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0040 475 Pfam Protein kinase domain 26 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0040 475 CDD STKc_CDK8_like 25 334 - -
HCH14g0040 475 SUPERFAMILY Protein kinase-like (PK-like) 21 335 IPR011009 -
HCH14g0040 475 ProSiteProfiles Protein kinase domain profile. 26 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0040 475 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
HCH14g0040 475 FunFam Putative cyclin-dependent kinase E-1 108 347 - -
HCH14g0040 475 MobiDBLite consensus disorder prediction 436 475 - -
HCH14g0040 475 FunFam Cyclin-dependent kinase e-1 14 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0040 HCH-Chr14:4110245 HCH1g1131 HCH-Chr1:58817114 4.80E-67 dispersed
HCH14g0040 HCH-Chr14:4110245 HCH4g0096 HCH-Chr4:516201 1.50E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81212 PF00069 Pkinase 1.30E-69 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0040 K02208 - csv:101203984 862.062