Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0085 ATGGAAAAGGAAAATACAGTGCACAAATTTGATGACAGTGTTGATACTAATGCTTGCTTAACTATTAAGAATGAAGATTTAGGATCTCAATCTCGCCTTAGTAGTGCAGGCAAGGAATCTGGACTGGAAACTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGCAATGCTGTTTTAGGATTTCTGGGCATCACCCCACCATATTCGGAAGGAAGAAAAAGCAATAGGGATATAAAGCGGAGTTTAGATAAAGTTGACAGCAGTTCTGCCCTGAATAAAAAAAATGTTGAAAGCAGGGATTCTGGTTCACTTGAGTTTATAGGCCCTGATGGGGAGGTTTTCATTTGCAAAGCGGATATTGAAATGGGTTCATGTCATCATGAAGATTCATTAGTCGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAATGGTTTGTCAGCCATGGATCTACAGTCTGTGAAATCTGTGGATGTATTGCGCAAAATATTACAACTGATGACTTTAAAAAGGTTGTGAGTTCTCTAAAGGAATATGAAGCTTTAAGGGAAAGAACTGTCAATGGGGAACCTAATTCTATGCAGATTCATGGTAGTACTGATATAGATCCTGATGCTGTTGCTGCTATACGCAGGCAGCGGCTTAGTGAAATCTCATTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCACAGTCCCAGGTTATCTCTGAACATTTAAATACCATATCAGAAAATGTTGTTCCTGCTGAAAATCTTGCAACTAGGTGGGCTGTTGAAGGTACTGGGATTCTCCTTGCTACAGGGCTGCTCACTGTAACTCTTGCATGGCTAATAGCTCCTCGAGTGGGGAAGAAAACTGCCAAAGGTGGCCTTCATATTCTTCTTGGAGGTGTCTGTGCATTAACAGTGGTGGTTTTCTTTCGTTTTTTCGTGTTAACCAAAATAAAATACGGACCGGCACGATACTGGGCCATTTTGTTTGTCTTTTGGTTTCTGGTGTTTGGCATTTGGGCGTCAAGGACACATGGCGCTCACACAGCATAA 1089 41.32 MEKENTVHKFDDSVDTNACLTIKNEDLGSQSRLSSAGKESGLETCRVCQCIESDRRGNAVLGFLGITPPYSEGRKSNRDIKRSLDKVDSSSALNKKNVESRDSGSLEFIGPDGEVFICKADIEMGSCHHEDSLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAQNITTDDFKKVVSSLKEYEALRERTVNGEPNSMQIHGSTDIDPDAVAAIRRQRLSEISLWFSPHNYSSNNNSTAQSQVISEHLNTISENVVPAENLATRWAVEGTGILLATGLLTVTLAWLIAPRVGKKTAKGGLHILLGGVCALTVVVFFRFFVLTKIKYGPARYWAILFVFWFLVFGIWASRTHGAHTA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14960463 14985392 + evm.model.ptg000014l.1123 HCH14g0085 557988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0085 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 176 IPR013083 -
HCH14g0085 362 SUPERFAMILY RING/U-box 130 170 - -
HCH14g0085 362 ProSiteProfiles Zinc finger RING-CH-type profile. 110 174 IPR011016 GO:0008270(InterPro)
HCH14g0085 362 PANTHER ZINC FINGER, RING-CH-TYPE 33 351 - -
HCH14g0085 362 SMART ringv_2 127 168 IPR011016 GO:0008270(InterPro)
HCH14g0085 362 Pfam RING-variant domain 129 167 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0085 HCH-Chr14:14960463 HCH9g0739 HCH-Chr9:4955685 3.80E-08 dispersed
HCH14g0085 HCH-Chr14:14960463 HCH13g0528 HCH-Chr13:3682607 1.00E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0085 - - - 0.0