Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0100 | ATGTGGTCCATTAAGTCCAACAATATACCCGACACGTCTGAGATGTTCCATAATTCATCACCGTCGAGACCTGATCAGGAAGAAAATTCTCTGGGAATAAACAGTTCCAATTCTGTCAATAAAAAACAACCGGATTCATTAAAAAGAGTCGATCAGATGCCTAAAAATGGTGTTAAATCTGTCTCAGCGTACAATGAGATCTTGACATCGATGTCGACCGGGGGATCGACAGCGACACCAGCGAGCGCAAAGACAGCGAATCTCGATACCAAGAGTTCTGAGAAGAGTCATGGTGAAAGCGGCAGCGGCGGCAGCGGAGGAGGAGGAAATGGTTTCCGTAGTGATAATTTAGAGAGCCCCTCGGTGCATATTAAACCTCATACAGGCGGCGATGTACGATGGGACGCCATTAATATGATATCGAAAGGTGCTATGTTGAATCTTAGCCATTTCAGGCTGCTGAAGAGGCTTGGATATGGTGACATTGGAAGCGTTTATCTTGTTGAATTGAGAGGAACTAACACCTTCTTTGCCATGAAAGTGATGGACAAGGCATCACTAGCAAGTAGAAATAAACTTTTGAGAGCACAAACTGAGAAGGAAATTCTTGGCCTTCTTGATCATCCATTCTTACCTACTCTATATTCATACTTTGAAACTGATAAGTTTTATTGCTTGGTCATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGCCAAAAGCAACCCAACAAATATTTTACAGAAGAAGCTGCCAGATTTTTTGCATCAGAAGTGTTGTTGGCACTCGAATATTTACACATGTTAGGCATAGTGTATAGAGATTTGAAGCCAGAAAATCTGTTGATTAGAGACGAAGGACATATAATGCTCTCAGATTTCGACCTTTCCCTCCGATGCTCCGTCAGTCCAACTCTCGTCAAATCTTCTTCTGTCAACGCCAACGGCAGTTCAAATAATACCTACGGCAACGCCGCCGCTGGAATCCTAGACGACGAGTTTGCGGTGCATGGTTGCATGCAGCCATCACATTTTCTCCCACGCATTCTCCCTTACAAAAAGAACCGTAAATCAAAATCCGATTTCGGCCTATTCGTCGGCGGCTCTCTCCCCGAACTCATGGCGGAACCGACTAACGTCCGATCCATGTCGTTTGTCGGAACACACGAGTACTTAGCCCCGGAGATAATCCAAGGAGAAGGTCACGGTAGCGCCGTCGACTGGTGGACTTTCGGCATCTTCTTATATGAACTTTTGCATGGGACGACACCGTTTAAGGGCTCCGGTAATCGAGCGACACTGTTCAATGTGGTCGGACAACCGCTGAGATTTCCGGAGATGCCACACGTGAGTTTAGCGGCGAGAGATCTTATAAGAGGGCTTCTGGTGAAAGAACCACAAAAGAGAATTGCGTATAGAAGGGGTGCGACGGAAATAAAACAGCATCCTTTCTTTGAGGGAGTAAATTGGGCTTTGGTTAGAAGTGCTATGCCCCCGCATGTTCCTGAGCCGGTTGATTTCTCCCAATTTGCTAGTAAAAAAGCCATTGCTGCTGTCTCCGAAGACAAGAAAACGGTTGACATTGGGAACCAAACCTCTGGTAGTGATCCAAATTATGTCGATTTTGAGTACTTTTAG | 1641 | 45.22 | MWSIKSNNIPDTSEMFHNSSPSRPDQEENSLGINSSNSVNKKQPDSLKRVDQMPKNGVKSVSAYNEILTSMSTGGSTATPASAKTANLDTKSSEKSHGESGSGGSGGGGNGFRSDNLESPSVHIKPHTGGDVRWDAINMISKGAMLNLSHFRLLKRLGYGDIGSVYLVELRGTNTFFAMKVMDKASLASRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFFASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNANGSSNNTYGNAAAGILDDEFAVHGCMQPSHFLPRILPYKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPEMPHVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFEGVNWALVRSAMPPHVPEPVDFSQFASKKAIAAVSEDKKTVDIGNQTSGSDPNYVDFEYF | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 19151352 | 19153630 | + | evm.model.ptg000014l.1108 | HCH14g0100 | 558003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0100 | 546 | SUPERFAMILY | Protein kinase-like (PK-like) | 148 | 513 | IPR011009 | - | |
HCH14g0100 | 546 | FunFam | Serine/threonine-protein kinase AGC1-5 | 149 | 234 | - | - | |
HCH14g0100 | 546 | MobiDBLite | consensus disorder prediction | 71 | 125 | - | - | |
HCH14g0100 | 546 | ProSiteProfiles | Protein kinase domain profile. | 151 | 486 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0100 | 546 | MobiDBLite | consensus disorder prediction | 71 | 89 | - | - | |
HCH14g0100 | 546 | FunFam | serine/threonine-protein kinase D6PK-like | 235 | 302 | - | - | |
HCH14g0100 | 546 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
HCH14g0100 | 546 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
HCH14g0100 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 381 | 504 | - | - | |
HCH14g0100 | 546 | CDD | STKc_phototropin_like | 149 | 507 | - | - | |
HCH14g0100 | 546 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 272 | 284 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH14g0100 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 235 | 304 | - | - | |
HCH14g0100 | 546 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 234 | - | - | |
HCH14g0100 | 546 | PANTHER | FLIPPASE KINASE 1-RELATED | 61 | 512 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
HCH14g0100 | 546 | FunFam | Serine/threonine-protein kinase AGC1-7 | 379 | 504 | - | - | |
HCH14g0100 | 546 | Pfam | Protein kinase domain | 380 | 486 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0100 | 546 | Pfam | Protein kinase domain | 152 | 304 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH14g0100 | 546 | SMART | serkin_6 | 151 | 486 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0100 | HCH-Chr14:19151352 | HCH9g0115 | HCH-Chr9:603573 | 2.10E-151 | dispersed | |
HCH14g0100 | HCH-Chr14:19151352 | HCH3g1038 | HCH-Chr3:14475731 | 3.80E-153 | transposed | |
HCH14g0100 | HCH-Chr14:19151352 | HCH6g0888 | HCH-Chr6:43684662 | 3.80E-153 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81214 | PF00069 | Pkinase | 3.00E-37 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0100 | - | - | - | 0.0 |