Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0100 ATGTGGTCCATTAAGTCCAACAATATACCCGACACGTCTGAGATGTTCCATAATTCATCACCGTCGAGACCTGATCAGGAAGAAAATTCTCTGGGAATAAACAGTTCCAATTCTGTCAATAAAAAACAACCGGATTCATTAAAAAGAGTCGATCAGATGCCTAAAAATGGTGTTAAATCTGTCTCAGCGTACAATGAGATCTTGACATCGATGTCGACCGGGGGATCGACAGCGACACCAGCGAGCGCAAAGACAGCGAATCTCGATACCAAGAGTTCTGAGAAGAGTCATGGTGAAAGCGGCAGCGGCGGCAGCGGAGGAGGAGGAAATGGTTTCCGTAGTGATAATTTAGAGAGCCCCTCGGTGCATATTAAACCTCATACAGGCGGCGATGTACGATGGGACGCCATTAATATGATATCGAAAGGTGCTATGTTGAATCTTAGCCATTTCAGGCTGCTGAAGAGGCTTGGATATGGTGACATTGGAAGCGTTTATCTTGTTGAATTGAGAGGAACTAACACCTTCTTTGCCATGAAAGTGATGGACAAGGCATCACTAGCAAGTAGAAATAAACTTTTGAGAGCACAAACTGAGAAGGAAATTCTTGGCCTTCTTGATCATCCATTCTTACCTACTCTATATTCATACTTTGAAACTGATAAGTTTTATTGCTTGGTCATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGCCAAAAGCAACCCAACAAATATTTTACAGAAGAAGCTGCCAGATTTTTTGCATCAGAAGTGTTGTTGGCACTCGAATATTTACACATGTTAGGCATAGTGTATAGAGATTTGAAGCCAGAAAATCTGTTGATTAGAGACGAAGGACATATAATGCTCTCAGATTTCGACCTTTCCCTCCGATGCTCCGTCAGTCCAACTCTCGTCAAATCTTCTTCTGTCAACGCCAACGGCAGTTCAAATAATACCTACGGCAACGCCGCCGCTGGAATCCTAGACGACGAGTTTGCGGTGCATGGTTGCATGCAGCCATCACATTTTCTCCCACGCATTCTCCCTTACAAAAAGAACCGTAAATCAAAATCCGATTTCGGCCTATTCGTCGGCGGCTCTCTCCCCGAACTCATGGCGGAACCGACTAACGTCCGATCCATGTCGTTTGTCGGAACACACGAGTACTTAGCCCCGGAGATAATCCAAGGAGAAGGTCACGGTAGCGCCGTCGACTGGTGGACTTTCGGCATCTTCTTATATGAACTTTTGCATGGGACGACACCGTTTAAGGGCTCCGGTAATCGAGCGACACTGTTCAATGTGGTCGGACAACCGCTGAGATTTCCGGAGATGCCACACGTGAGTTTAGCGGCGAGAGATCTTATAAGAGGGCTTCTGGTGAAAGAACCACAAAAGAGAATTGCGTATAGAAGGGGTGCGACGGAAATAAAACAGCATCCTTTCTTTGAGGGAGTAAATTGGGCTTTGGTTAGAAGTGCTATGCCCCCGCATGTTCCTGAGCCGGTTGATTTCTCCCAATTTGCTAGTAAAAAAGCCATTGCTGCTGTCTCCGAAGACAAGAAAACGGTTGACATTGGGAACCAAACCTCTGGTAGTGATCCAAATTATGTCGATTTTGAGTACTTTTAG 1641 45.22 MWSIKSNNIPDTSEMFHNSSPSRPDQEENSLGINSSNSVNKKQPDSLKRVDQMPKNGVKSVSAYNEILTSMSTGGSTATPASAKTANLDTKSSEKSHGESGSGGSGGGGNGFRSDNLESPSVHIKPHTGGDVRWDAINMISKGAMLNLSHFRLLKRLGYGDIGSVYLVELRGTNTFFAMKVMDKASLASRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFFASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNANGSSNNTYGNAAAGILDDEFAVHGCMQPSHFLPRILPYKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPEMPHVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFEGVNWALVRSAMPPHVPEPVDFSQFASKKAIAAVSEDKKTVDIGNQTSGSDPNYVDFEYF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19151352 19153630 + evm.model.ptg000014l.1108 HCH14g0100 558003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0100 546 SUPERFAMILY Protein kinase-like (PK-like) 148 513 IPR011009 -
HCH14g0100 546 FunFam Serine/threonine-protein kinase AGC1-5 149 234 - -
HCH14g0100 546 MobiDBLite consensus disorder prediction 71 125 - -
HCH14g0100 546 ProSiteProfiles Protein kinase domain profile. 151 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0100 546 MobiDBLite consensus disorder prediction 71 89 - -
HCH14g0100 546 FunFam serine/threonine-protein kinase D6PK-like 235 302 - -
HCH14g0100 546 MobiDBLite consensus disorder prediction 1 43 - -
HCH14g0100 546 MobiDBLite consensus disorder prediction 1 58 - -
HCH14g0100 546 Gene3D Transferase(Phosphotransferase) domain 1 381 504 - -
HCH14g0100 546 CDD STKc_phototropin_like 149 507 - -
HCH14g0100 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0100 546 Gene3D Transferase(Phosphotransferase) domain 1 235 304 - -
HCH14g0100 546 Gene3D Phosphorylase Kinase; domain 1 149 234 - -
HCH14g0100 546 PANTHER FLIPPASE KINASE 1-RELATED 61 512 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH14g0100 546 FunFam Serine/threonine-protein kinase AGC1-7 379 504 - -
HCH14g0100 546 Pfam Protein kinase domain 380 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0100 546 Pfam Protein kinase domain 152 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0100 546 SMART serkin_6 151 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0100 HCH-Chr14:19151352 HCH9g0115 HCH-Chr9:603573 2.10E-151 dispersed
HCH14g0100 HCH-Chr14:19151352 HCH3g1038 HCH-Chr3:14475731 3.80E-153 transposed
HCH14g0100 HCH-Chr14:19151352 HCH6g0888 HCH-Chr6:43684662 3.80E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81214 PF00069 Pkinase 3.00E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0100 - - - 0.0