Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0101 ATGAACAACGGCAATCGCAGGAAGCGTCCACCGCCACCGCAGCAGGCTCCACCGGCTAAGCACCAAGCACAAGCACATGCATTATCTCAAGACGAAGATTTTGTCGACGAAGACGTCTTCCTTGACGAAACCCTCATCGACGAAGACGCTCTTATTCTCCGCGACATTGAAGAGCGTCAAGCCCTCGCTTCTCGTTTATCTAAATGGACTCGTCCATCTCTTTCCAACGATTACCTATCCCAGTCCAAGACTATCATTTTTCAGCAATTGGAGATTGATTATGTCATCGGAGAAAGTTACAAAGAATTGTTGCCTAATTTTTCTGGTCCTGCTGCTATGATCAGAATGTTTGGGGTTACGAGAGAAGGACATAGTGTATGCTGCAACGTTCATGGATTTGAACCCTATTTCTATATTAGTTGCCCTCCAGGAATGGCTCCTGATGATATCTCTCTTTTTCACCGAATTCTTGAGGCTAGAATGAAGGAGGTCAATAGGAGCAGTAAGGCACCGAGTTTTGTACGTCGAATTGAATTGGTGCAAAAGAGAAGTATTATGTACTATCAGCAGCAGACTTCACAACCCTTTCTTAAGATTGTTGTTGCATTGCCAACAATGGTCGCCAGCTGCCGTGGTATTCTTGATAAAGGCATACAAATTGATGGTTTTGGTATGAAGAGTTTCATGACATATGAAAGCAATGTTCTTTTTGCCCTTCGTTTCATGATTGATTGCAATATTGTTGGGGGGAACTGGATTGAGGTGCCAGTGGGCAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTAGAGTTTGACTGCCTATATTCAGACTTGATCAGCCATTCCCCAGATGGGGAATTCTCTAAAATGGCTCCATTTCGGATTTTGAGTTTTGATATTGAGTGTGCCGGGCGTAAAGGTCATTTTCCTGAGCCTAGCCAGGATCCAGTGATCCAGGTGGCAAATTTAGTTACTTTGCAGGGAGAGGACCAACCACTTATCCGTAATGTCATGACCCTTAAGTCTTGTGCTCCTATAGCAGGTGTTGATGTCATGTCATTTGATACAGAACGCGAAGTTTTGCTAGCTTGGAGGGATCTAGTCCGGGAAGTGGACCCTGATATCATAATTGGATATAACATTTGCAAATTTGATTTGCCATATATTATTGAGAGAGCTGAAACATTAAAAATAGCTGAATTTCCTATACTGGGTCGTATTAGGAATAGCAAAGTTCGTGTAAAAGATACAACCTTCTCTTCGAGACAGCTTGGAACCAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTGATCCAGGTTATGCAACGAGATTATAAATTAAGTTCATATTCGTTGAATTCTGTTTCTTCACATTTTCTTTCAGAACAGAAGGAGGACGTTCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAGACCCGGAGACGATTGGCTGTTTATTGTTTGAAGGATGCCTATCTTCCACAACGACTTTTAGATAAACTGATGTTAATGTACAATTACGTGGAGATGGCTAGAGTCACAGGCGTTCCGATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTTCTGAGGAAGGCAAAACAGAAAAACCTTGTTATTCCAAATGCTAAACAGGCAGGATCTGATCAAGGAACATATGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAAAAGCCCATTGCAACGTTGGATTTCGCTTCTCTGTATCCATCTATCATGATGGCGTATAATTTATGTTATTGCACTCTGGTGACTCCTGATGATATTCGTAAGCTAAACCTGCCTCCAGAAGATTTCAATAAGACCCCTTCTGGTGAAATATTTGTTAAATCGAATTTACAGAAGGGAATACTTCCTGAAATATTAGAAGAGCTACTGACTGCTCGAAAAAGAGCAAAAGCAGATTTGAAGGAAGCTAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGTTGGCATTGAAGATAAGTGCAAATTCTGTTTATGGATTTACTGGAGCTACTGTTGGCCAGTTACCCTGTATAGAGATATCATCTAGTGTTACCAGTTATGGTCGACAAATGATTGAGCACACGAAAAAGCTTGTGGAAGATAAATTTACGACACTTGGGGGCTATGAGCACAATGCTGAGGTTATCTATGGTGATACAGATTCTGTGATGGTACAATTTGGTGTGCCTACTGTAGAAGAAGCAATGATCTTGGGAAGGGAAGCAGCTGATTATATTAGTGGCACTTTTACAAAACCCATCAAATTAGAGTTTGAGAAGGTTTATTATCCATATCTGTTGATCAGCAAGAAGAGATACGCTGGCCTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACAAAAGGCATTGAAACAGTCCGAAGAGATAATTGCTTACTGGTGAAAAATCTTGTAAACGAGTGCTTGCATAAAATTCTTATTGATAGAGATGTCCCTGGGGCAGTCCAATTTGTGAAGAATACAATTTCAGATCTTCTTATGAACCGTGTTGATTTATCACTCTTGGTCATCACAAAGGGACTGACAAAGACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAACGCATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTACGTGATTGTTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAGTCAGAGGATCCCATCTATGTTCTAGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCTATTTTGAAGAATGCCAGTAAGGAACTTCTACATGGAAGTCACACAAGATCAATTTTTATTTCTACTCCTTCAAATAGTGGCATAATGAGATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTATTGAGCAATACGGATAAAACTCTCTGTTCACACTGTAAAGGAAGAGAAGCAGAGCTTTACTGCAAAGCGGTAACAAATGTGTCTGATTTGGAGATGGTTTTTGGGAAGCTTTGGACACAATGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTTCTATGTACAAGTCGAGATTGTCCAATATTTTATCGAAGAAAGAAAGCCCAGAAAGACATGGCTGAAGCTAAACTACAATTAGAACGTTGGAATTTCTAA 3264 40.84 MNNGNRRKRPPPPQQAPPAKHQAQAHALSQDEDFVDEDVFLDETLIDEDALILRDIEERQALASRLSKWTRPSLSNDYLSQSKTIIFQQLEIDYVIGESYKELLPNFSGPAAMIRMFGVTREGHSVCCNVHGFEPYFYISCPPGMAPDDISLFHRILEARMKEVNRSSKAPSFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVASCRGILDKGIQIDGFGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHSPDGEFSKMAPFRILSFDIECAGRKGHFPEPSQDPVIQVANLVTLQGEDQPLIRNVMTLKSCAPIAGVDVMSFDTEREVLLAWRDLVREVDPDIIIGYNICKFDLPYIIERAETLKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLIQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMLMYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPDDIRKLNLPPEDFNKTPSGEIFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMILGREAADYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQFVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMRFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSDLEMVFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLERWNF 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19277072 19312088 + evm.model.ptg000014l.1107 HCH14g0101 558004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0101 1087 Gene3D - 295 513 IPR036397 GO:0003676(InterPro)
HCH14g0101 1087 PRINTS DNA-directed DNA-polymerase family B signature 678 690 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH14g0101 1087 PRINTS DNA-directed DNA-polymerase family B signature 586 599 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH14g0101 1087 PRINTS DNA-directed DNA-polymerase family B signature 739 747 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH14g0101 1087 Pfam DNA polymerase family B 527 960 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
HCH14g0101 1087 Gene3D - 815 970 IPR042087 -
HCH14g0101 1087 FunFam DNA polymerase 815 971 - -
HCH14g0101 1087 Pfam DNA polymerase family B, exonuclease domain 230 463 IPR006133 -
HCH14g0101 1087 MobiDBLite consensus disorder prediction 1 28 - -
HCH14g0101 1087 NCBIfam DNA polymerase (pol2) 350 958 - -
HCH14g0101 1087 CDD DNA_polB_delta_exo 291 519 - -
HCH14g0101 1087 FunFam DNA polymerase 91 266 - -
HCH14g0101 1087 Gene3D DNA Polymerase, chain B, domain 1 90 267 - -
HCH14g0101 1087 CDD POLBc_delta 568 961 - -
HCH14g0101 1087 ProSitePatterns DNA polymerase family B signature. 741 749 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
HCH14g0101 1087 SUPERFAMILY Ribonuclease H-like 111 533 IPR012337 -
HCH14g0101 1087 Pfam C4-type zinc-finger of DNA polymerase delta 997 1068 IPR025687 -
HCH14g0101 1087 SUPERFAMILY DNA/RNA polymerases 552 962 IPR043502 -
HCH14g0101 1087 SMART polmehr3 294 753 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH14g0101 1087 Gene3D Helix hairpin bin 642 694 - -
HCH14g0101 1087 Gene3D Palm domain of DNA polymerase 568 798 IPR023211 -
HCH14g0101 1087 FunFam DNA polymerase 334 568 - -
HCH14g0101 1087 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 68 1063 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
HCH14g0101 1087 FunFam DNA polymerase 642 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0859 HCH-Chr10:10376870 HCH14g0101 HCH-Chr14:19277072 1.70E-89 dispersed
HCH14g0101 HCH-Chr14:19277072 HCH2g0050 HCH-Chr2:3630290 4.60E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0101 K02327 - csv:101219332 2003.41