Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0137 ATGGAAACCAACAATCTCCCAAACAATACTTGTGATCTCCACCAAACCACCATGGATGACCAACAAATTCTCCATTATCAGCAGATTAATGATCTTGAATCTCTCTTGTCATACTTCCCTTTTCAACCCCATAATATCATTGATCATCAAAACCTCCCATCTTCTTCCTCTTCTTCTTCCCTCTTGTTATCTTCTCCTTTCCCTCTGGAACCTACAGCTGCTGATCAGGACGAGCAAGAAGAAGAGCTCGGCGCAATGAAAGAAATGATGTACAAGATTGCTTCTATGCAGCCGGTGGACATCGACCCTACGACTATCCGGAAGCCGAAACGCCGAAACGTCCGGATTAGCGATGACCCACAGAGCATCGCTGCCCGTCTCCGGCGAGAAAGGATAAGTGAGAAGATCCGAATTCTTCAGAGACTTGTTCCTGGAGGGACGAAGATGGACACAGCATCCATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAATCGAGCCAACCGCCGCAGCCAAGCATTGGTGGTGCCAGTGCGGTAGGGTGGCCATTTACATTCCATAGAGGCAATGGTTCAAGCTCCTCATCGGCTTCCATGAAGGCTCCTTCCATGAGACCACCAGGATGGTGA 654 48.47 METNNLPNNTCDLHQTTMDDQQILHYQQINDLESLLSYFPFQPHNIIDHQNLPSSSSSSSLLLSSPFPLEPTAADQDEQEEELGAMKEMMYKIASMQPVDIDPTTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQPSIGGASAVGWPFTFHRGNGSSSSSASMKAPSMRPPGW 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23587551 23588204 + evm.model.ptg000014l.1071 HCH14g0137 558040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0137 217 FunFam BHLH transcription factor 119 180 - -
HCH14g0137 217 CDD bHLH_AtIND_like 117 174 - -
HCH14g0137 217 MobiDBLite consensus disorder prediction 50 78 - -
HCH14g0137 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 174 IPR036638 GO:0046983(InterPro)
HCH14g0137 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
HCH14g0137 217 MobiDBLite consensus disorder prediction 50 66 - -
HCH14g0137 217 MobiDBLite consensus disorder prediction 197 217 - -
HCH14g0137 217 Gene3D - 119 179 IPR036638 GO:0046983(InterPro)
HCH14g0137 217 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 192 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0137 217 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
HCH14g0137 217 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0137 HCH-Chr14:23587551 HCH4g0634 HCH-Chr4:4156375 1.10E-34 dispersed
HCH14g0137 HCH-Chr14:23587551 HCH12g0625 HCH-Chr12:3745148 1.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32893 PF00010 HLH 1.30E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0137 - - - 0.0