Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0137 | ATGGAAACCAACAATCTCCCAAACAATACTTGTGATCTCCACCAAACCACCATGGATGACCAACAAATTCTCCATTATCAGCAGATTAATGATCTTGAATCTCTCTTGTCATACTTCCCTTTTCAACCCCATAATATCATTGATCATCAAAACCTCCCATCTTCTTCCTCTTCTTCTTCCCTCTTGTTATCTTCTCCTTTCCCTCTGGAACCTACAGCTGCTGATCAGGACGAGCAAGAAGAAGAGCTCGGCGCAATGAAAGAAATGATGTACAAGATTGCTTCTATGCAGCCGGTGGACATCGACCCTACGACTATCCGGAAGCCGAAACGCCGAAACGTCCGGATTAGCGATGACCCACAGAGCATCGCTGCCCGTCTCCGGCGAGAAAGGATAAGTGAGAAGATCCGAATTCTTCAGAGACTTGTTCCTGGAGGGACGAAGATGGACACAGCATCCATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAATCGAGCCAACCGCCGCAGCCAAGCATTGGTGGTGCCAGTGCGGTAGGGTGGCCATTTACATTCCATAGAGGCAATGGTTCAAGCTCCTCATCGGCTTCCATGAAGGCTCCTTCCATGAGACCACCAGGATGGTGA | 654 | 48.47 | METNNLPNNTCDLHQTTMDDQQILHYQQINDLESLLSYFPFQPHNIIDHQNLPSSSSSSSLLLSSPFPLEPTAADQDEQEEELGAMKEMMYKIASMQPVDIDPTTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQPSIGGASAVGWPFTFHRGNGSSSSSASMKAPSMRPPGW | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 23587551 | 23588204 | + | evm.model.ptg000014l.1071 | HCH14g0137 | 558040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0137 | 217 | FunFam | BHLH transcription factor | 119 | 180 | - | - | |
HCH14g0137 | 217 | CDD | bHLH_AtIND_like | 117 | 174 | - | - | |
HCH14g0137 | 217 | MobiDBLite | consensus disorder prediction | 50 | 78 | - | - | |
HCH14g0137 | 217 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 121 | 174 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0137 | 217 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 165 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0137 | 217 | MobiDBLite | consensus disorder prediction | 50 | 66 | - | - | |
HCH14g0137 | 217 | MobiDBLite | consensus disorder prediction | 197 | 217 | - | - | |
HCH14g0137 | 217 | Gene3D | - | 119 | 179 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0137 | 217 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 14 | 192 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0137 | 217 | Pfam | Helix-loop-helix DNA-binding domain | 125 | 166 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0137 | 217 | SMART | finulus | 122 | 171 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0137 | HCH-Chr14:23587551 | HCH4g0634 | HCH-Chr4:4156375 | 1.10E-34 | dispersed | |
HCH14g0137 | HCH-Chr14:23587551 | HCH12g0625 | HCH-Chr12:3745148 | 1.20E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32893 | PF00010 | HLH | 1.30E-06 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0137 | - | - | - | 0.0 |