Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0166 ATGGAGACTGCTGGGAGACTCATTGCTGGGTCTCATAATAGAAACGAGTTTGTTTTGATCAATGCTGATGAGACTTCTCGGGTGAAGTCTGAGAACGAATTGAGTGGGCAAACATGTCAGATTTGCGGAGACGATGTAGAGATTACTGTTGAAAGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTATGTAGACCTTGTTACGAGTATGAAAGAAGAGAGGGAAATCAAGCTTGTCCACAGTGTAAAACCAGATATAAGCGCATCAAAGGTAGTCCTAGGGTTGAAGGTGATGAAGATGAAGATGATATTGATGATTTGGATAATGAGTTTGATTATGGGTACCTTGATGCTTTTGGTCCTCAGCATCCTGCAGAGGCAATGCTCACTGCACATCTTAACACTGGCTGTGGTTCCCACCCCAATGCATCTCAAGTCTCTGGAAGGTCAGAGCATGAACCTTCTCCCCTCAATTCTGAGATTCCTCTTTTGACGTATGGCGAGGAGGATTCTGAGATTTCTTCTGATCAACATGCTCTCATTGTACCTCATTTTATGGGTCATGGAAACAGAGTCCATCCATTTCCTTTCTCTGATCAATCAATTCCCTTGCAACCTAGACCAATGGTTCCCCAAAAAGACATTGCAGTATATGGTTATGGGAGTGTGGCGTGGAAGGACAGAATGGAAGAGTGGAAGAAAAAGCAAAATGATAAACTTCAAGTGATTAAGCACCATGGGGTTGATGATGGAGGAGACGATATTGATGATTCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTCTCAAGGAAAATGCCCATCCCTTCTAGCAAGATAAATCCATACAGATTAATTATCTTGCTTCGTCTTGTTATTCTTGGATTATTTTTCCATTACAGAATTCTTCATCCAGTTAATGATGCCTATGGTTTGTGGTTGACTTCGGTAATATGTGAAATATGGTTTGCTGTATCATGGATTCTGGACCAGTTCCCAAAATGGTATCCAATTGTAAGGGAAACTTATCTTGATAGGCTGTCTCTGAGGTATGAAAAAGAAGGAAAACCTTCTGAATTAGCCAATGTGGACATTTTTGTTAGTACTGTTGATCCTTTGAAAGAACCTCCACTGATCACTGCAAACACAGTACTTTCCATCCTTGCAGTCGACTATCCAATCGATAAGGTTGCATGCTATGTTTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTTTCTGAGACATCTGAATTTGCTAGGAAATGGGTCCCTTTCTGTAAGAAATTTAACATTGAGCCCCGTGCCCCAGAATTTTATTTTTCTCAGAAGATGGATTATTTGAAGAACAAGGTTCACCCAATGTTTGTCAGGGAAAGGCGGGCAATGAAGAGAGAATACGAAGAATTTAAGGTTAGGATAAATGGTTTGGTCTCCATGGCTCAAAAGGTTCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAACGTCCGAGACCACCCTGGCATGATTCAGGTCTTCCTGGGCCACAGTGGAGTTCGTGATGTTGAAGGAAATGAGCTACCTCGTCTGGTTTATGTTTCTCGTGAAAAGAGGCCGGGGTTTGAACATCACAAGAAGGCTGGGGCCATGAATGCACTGGTTCGGGTCTCGGCTATTCTGTCCAATGCTCCTTATCTTCTTAATGTTGACTGTGATCACTATATTAACAATAGCAAAGCACTTAGAGAAGCTATGTGTTTCATGATGGACCCTACATCAGGGAAGAAAGTTTGCTATGTGCAGTTTCCTCAAAGATTTGATGGCATTGACCGTCACGATAGATACTCAAACCGGAATGTTGTCTTCTTTGATATTAACATGAAAGGATTAGATGGACTGCAAGGACCAATATATGTCGGGACAGGATGTGTTTTTCGGAGGGTTGCCCTTTATGGTTATGATGCTCCTGTCAAGAAGAAGCCCCCAAGCAAAACATGCAACTGTTTGCCGAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAAGAACAGGAAAGGAAAGGCAAAGAATGACAAAAAGAAAAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATTGAAGAATTAAGCATTGAGAAATTGAACGCGTCACAAATAAAATTGGAGAAAAAATTTGGGCAATCTCCAGTATTTGTCGCCTCCACCTTACTGGAAAATGGAGGAGTTCCTCATGATGTGAGCGCTGCATCACTCCTTAGAGAAGCCATCCAAGTTATAAGTTGTGGTTACGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCAGTGACTGAAGATATCTTAACTGGATTCAAAATGCACTGTCACGGCTGGCGATCTGTGTACTGTATCCCCAAGAGACCTGCATTTAAAGGTTCAGCTCCAATCAACCTTTCAGATCGTTTACACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATACTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGCGGGTTGAAATGCTTGGAACGTTTTTCGTACATAAACTCAGTGGTCTATCCGTTGACCTCCATCCCCTTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATAAGCAACTATGCTAGTCTCATTTTCATGGCGCTCTTCATTTCGATTGCTGCTACTGGTATCTATGAGATGCAGTGGGGTGGTGTTGGGATTGACGATTGGTGGAGAAACGAGCAGTTCTGGGTAATTGGGGGCGTTTCAGCTCATCTTTTTGCACTCTTCCAAGGTCTGCTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACTGTTACATCCAAAGCGGCCGATGATGGTGAATTTTCAGAGCTCTACATTTTCAAGTGGACATCATTGTTAATACCTCCCACAACTTTGTTGTTCATAAACATTGTTGGTGTGATTGTCGGTGTCTCAGACGCCATTAATAACGGATACGATTCATGGGGTCCTCTTTTTGGAAGGCTATTTTTCGCTTTATGGGTGATTATCCACCTCTACCCCTTCTTGAAGGGGTTGCTAGGGAAACAAGATCGAATGCCGACGATCATTGTTGTTTGGTCAATTCTTTTAGCTTCAATCTTAACTTTACTGTGGGTGAGGATCAACCCATTTGTATCAAGAGATGGTCCTGTTTTAGAAGTTTGTGGGTTGAATTGCGAATAG 3282 42.84 METAGRLIAGSHNRNEFVLINADETSRVKSENELSGQTCQICGDDVEITVERELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGYLDAFGPQHPAEAMLTAHLNTGCGSHPNASQVSGRSEHEPSPLNSEIPLLTYGEEDSEISSDQHALIVPHFMGHGNRVHPFPFSDQSIPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKKQNDKLQVIKHHGVDDGGDDIDDSDLPMMDEARQPLSRKMPIPSSKINPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIVRETYLDRLSLRYEKEGKPSELANVDIFVSTVDPLKEPPLITANTVLSILAVDYPIDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKMDYLKNKVHPMFVRERRAMKREYEEFKVRINGLVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAILSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPVKKKPPSKTCNCLPKWCCLCCGSRKNRKGKAKNDKKKKTKHREASKQIHALENIEEGIEELSIEKLNASQIKLEKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGGGLKCLERFSYINSVVYPLTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGIYEMQWGGVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLFINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCE 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 26557727 26564162 + evm.model.ptg000014l.1042 HCH14g0166 558069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0166 1093 SUPERFAMILY RING/U-box 25 111 - -
HCH14g0166 1093 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
HCH14g0166 1093 MobiDBLite consensus disorder prediction 684 703 - -
HCH14g0166 1093 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
HCH14g0166 1093 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 910 IPR029044 -
HCH14g0166 1093 CDD mRING-HC-C4C4_CesA 37 87 - -
HCH14g0166 1093 Coils Coil 710 730 - -
HCH14g0166 1093 MobiDBLite consensus disorder prediction 141 161 - -
HCH14g0166 1093 MobiDBLite consensus disorder prediction 141 156 - -
HCH14g0166 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 271 1062 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH14g0166 1093 FunFam Cellulose synthase 21 112 - -
HCH14g0166 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
HCH14g0166 1093 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 658 IPR029044 -
HCH14g0166 1093 Pfam Cellulose synthase 366 1081 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH14g0166 1093 FunFam Cellulose synthase 483 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1506 HCH-Chr12:41220027 HCH14g0166 HCH-Chr14:26557727 0.00E+00 dispersed
HCH14g0166 HCH-Chr14:26557727 HCH8g0949 HCH-Chr8:45694181 0.00E+00 dispersed
HCH14g0166 HCH-Chr14:26557727 HCH2g0720 HCH-Chr2:50892902 2.40E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0166 K10999 - csv:101211094 2040.0