Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0183 ATGATACCTTTCTTCTTCTTCTTCTTCCTCCTCCTCTCTCTCACTCTTCCCTCTCATTCTCTCTCTGCTTCTCCAACTGCAACTCCTTCTTCTACTTATAAAGATTCCCAACAACTCATCAACTTCAAATCTTCACTTCCAAATCCATCAACCCTTCAAGACTGGCTTCCCAACAAAGACCCTTGTTCTTTTTCAGGCATTACTTGCAAAGAAACCAAAATCTCTTCTATAAACCTTAGCTCCTTCTCTCTCAGCTCTAACTTCAGCCATGTTTTTCCTCTTCTTGCTACTCTTGAACACTTGGAATCTCTCTCTCTTAAATCCACTAATCTTACTGGCCCCATTTCATTGCCTGCTGGATTTAAGTGCAGCTCTTTATTGTCTACTTTAGATCTGTCTTCCAATAACTTGTTTGGTTCTGTTTCTGATATTTCCAACTTGGGTTTATGTTTTAGTCTTAAAGCTCTTAATTTGTCAGCCAATTTGTTTGATTTTCCACTCAAGGACTCCAGTGCCGGATTCAAGCTTGATTTGCAGGTTCTTGATCTTTCTTATAATAAGATTGTTGGCTCCAAGTTTGTTTCTTGGATGTCTTCTAGTGGTTGTAATGAGTTGCAGCACCTGGCATTGAAGGGGAATAGAGTTAGTGGTGAGATTAGTTTTTCAATTTGTAATAAGTTGGAGCATTTGGACATCTCTGCCAATAATTTCTCGGTCGATATTCCGTCGTTCGGCGATTGCTCGGCGTTGAGTTATCTCGATATCTCCGGTAATAAGTTCACCGGAGAAGTTGGTCGTGTTTTGTCGAATTGTATGCAGCTCAGTTTTGTCAACCTGTCCAGCAATCAGTTAACAGGTCCAATTCCTTCATTACCATCTACAAATTTGTGGTTTCTTTCACTTGCAGAAAATAAGTTTCAGGGTGAGATTCCTTTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTGGATCTTTCCTCTAATAATTTAGTAGGAGCTGTGCCTTCTGTTTTGAGTGCTTGTTCTTCATTGGAATTTCTTGACATTTCAAAGAATAACTTGTCTGGTGAACTGCCCATTTCGATATTTGCCAAAATGACTAGTCTGAAGATACTTTCCGTATCCGATAACAAGTTTTTCGGTCAGTTGCCAGATTCGCTATCTCAACTTGCCACTTTAGACTCTTTGGATCTGAGTTCAAATAATTTTTCTGGGTCCATTCCTGCTGGGCTTTGTCAAGACCCGGGAAGCAACTTGAAAGAATTGTCTCTTCAGAACAATTGGCTCACGGGTCGAATCCCTGCCACCATTAGTAACTGTTCTCAGCTGGTTTCTCTTGATTTGAGCTTCAATTTCCTCAGTGGGACGATCCCGTCTAGCTTAGGATCCTTATCAAAGCTCAGAAATTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCGCAGGAGTTTATGAACCTCCAGGGGCTTGAGAATCTGATCCTTGATTTTAATGAGCTCACTGGGACTATTCCTTCTGGTTTAAGCCACTGCACCAACTTGAATTGGATTTCCTTGTCGAACAATCGGTTGAGCGGCGAGATTCCTGCCTGGATTGGGCGACTGCCGAGCCTAGCTATCCTGAAACTCAGCAACAATTCATTCTACGGTAGAATTCCTCCTGAGCTGGGTGATGGCCGGAGCTTGATCTGGCTGGACCTAAATACGAATTTCTTGAATGGAACAATCCCTCCGGAGCTATTTAGGCAATCTGGTAATATTGCCGCCAATTTCATCACAGGGAAGTCATATGCATACATCAAGAATGATGGAAGCAAGCAGTGCCATGGAGCTGGAAATTTACTTGAGTTTGCTGGGATAAGGCAGGAACAAGTGAACAGAATTTCAAGCAAGAGTCCCTGCAATTTCACCAGGGTCTATAAAGGTATGACACAGCCCACATTTAATCATAACGGGTCGATGATTTTTTTCGATATTTCGCACAATATGCTTTCTGGTAGTATTCCCAAGGAGATTGGTTCTACAAACTATCTCTATATATTGAATTTGGGCCATAATAACCTCTCTGGAATCATACCACAAGAGCTCGGTGACTTGACAAAGCTTAACATTCTTGATCTCTCGAACAACGAGCTTGAAGGATCGATTCCATTGTCTTTGACTGGACTTTCCTCGCTCATAGAGATTGATCTGTCAAATAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTCGAAACGTTCGCAGCATCTAGTTTTGCAAATAATTCAGGCCTCTGTGGATATCCGCTTCCCAAATGTGGGATTGATTCAGGATCAAGTGCAAATGCTCAGCATCAAAGGTCTCATAGGAAACAAGCATCACTTGCAGGGAGCGTGGCAATGGGGCTACTATTCTCACTCTTCTGTATATTTGGTTTGATTATAGTTGTTATAGAGACGAGGAAAAGAAGGAAAAAGAAAGATTCCGCCCTTGATGCTTATGTCGATAGTCATTCCCATTCAGGTACGACAGCCACTGTTAACTGGAAGCTCACTGGTGCCCGTGAAGCATTAAGCATCAATCTCGCAGCATTTGAGAAGCCACTCCGGAAGCTTACCTTTGCAGATCTTCTCGATGCCACAAATGGCTTTCACAATGATAGCCTTATTGGTTCTGGGGGTTTTGGTGATGTATACAAGGCTCAATTGAAGGATGGAAGTGTTGTAGCGATCAAGAAACTAATTCATATCAGTGGACAGGGTGATAGGGAATTCACTGCTGAAATGGAAACAATTGGCAAAATCAAGCACCGGAATCTGGTTCCTCTTCTGGGCTACTGCAAAGTAGGAGAAGAACGACTTCTGGTCTACGAGTACATGAAATATGGAAGTTTGGAAGATGTCTTGCATGACCAAAGGAAAGCTGGAATCAAACTGAATTGGGCTGCAAGGAGAAAGATTGCTATTGGGGCTGCCAGAGGACTGGCTTTCCTTCACCACAATTGCATTCCTCACATCATTCATAGGGATATGAAATCAAGCAATGTTTTACTGGATGAGAACTTAGAAGCCAGAGTCTCCGATTTTGGAATGGCGAGACTGATGAGTGCGATGGACACTCATTTGAGTGTTAGCACATTAGCAGGGACACCTGGTTACGTCCCTCCTGAATATTATCAGAGCTTCAGGTGTTCCACAAAAGGTGATGTTTATAGTTATGGTGTAGTTATGCTCGAGCTCTTAACAGGCAAGCGACCCACAGATTCAGCTGATTTCGGTGACAACAATCTGGTCGGGTGGGTAAAACAACATGCCAAATTGAAAATAAGTGACGTTTTTGATCCCGAGCTCATGAAAGAGGATCCGAGCCTCGAGATTGAGCTTTTACAACACTTAAAGGTAGCTTGTGCTTGCTTAGATGATAGGTCATGGCGGCGTCCCACAATGATTCAAGTCATGACGATGTTCAAGGAAATACAAGCAGGTCCAGGAATGGATTCGCAATCTACAATCGGCACGGACGACGGAGGTTTCAGTGTCGAGATGAGCATAAAGGAAGTACCAGAAAGCAAGCAATAG 3570 42.69 MIPFFFFFFLLLSLTLPSHSLSASPTATPSSTYKDSQQLINFKSSLPNPSTLQDWLPNKDPCSFSGITCKETKISSINLSSFSLSSNFSHVFPLLATLEHLESLSLKSTNLTGPISLPAGFKCSSLLSTLDLSSNNLFGSVSDISNLGLCFSLKALNLSANLFDFPLKDSSAGFKLDLQVLDLSYNKIVGSKFVSWMSSSGCNELQHLALKGNRVSGEISFSICNKLEHLDISANNFSVDIPSFGDCSALSYLDISGNKFTGEVGRVLSNCMQLSFVNLSSNQLTGPIPSLPSTNLWFLSLAENKFQGEIPLSIADLCSSLVELDLSSNNLVGAVPSVLSACSSLEFLDISKNNLSGELPISIFAKMTSLKILSVSDNKFFGQLPDSLSQLATLDSLDLSSNNFSGSIPAGLCQDPGSNLKELSLQNNWLTGRIPATISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLRNLIMWLNQLEGEIPQEFMNLQGLENLILDFNELTGTIPSGLSHCTNLNWISLSNNRLSGEIPAWIGRLPSLAILKLSNNSFYGRIPPELGDGRSLIWLDLNTNFLNGTIPPELFRQSGNIAANFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFFDISHNMLSGSIPKEIGSTNYLYILNLGHNNLSGIIPQELGDLTKLNILDLSNNELEGSIPLSLTGLSSLIEIDLSNNHLNGSIPESAQFETFAASSFANNSGLCGYPLPKCGIDSGSSANAQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIETRKRRKKKDSALDAYVDSHSHSGTTATVNWKLTGAREALSINLAAFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQRKAGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPSLEIELLQHLKVACACLDDRSWRRPTMIQVMTMFKEIQAGPGMDSQSTIGTDDGGFSVEMSIKEVPESKQ 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27506950 27510519 + evm.model.ptg000014l.1025 HCH14g0183 558086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0183 1189 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 649 770 - -
HCH14g0183 1189 FunFam Serine/threonine-protein kinase BRI1-like 1 594 651 - -
HCH14g0183 1189 Pfam Protein kinase domain 881 1150 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0183 1189 SUPERFAMILY Protein kinase-like (PK-like) 867 1159 IPR011009 -
HCH14g0183 1189 Gene3D - 592 652 - -
HCH14g0183 1189 Pfam Leucine rich repeat 491 549 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 226 246 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 344 363 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 444 465 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 369 391 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 419 441 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 Pfam Leucine Rich Repeat 320 341 IPR001611 GO:0005515(InterPro)
HCH14g0183 1189 SUPERFAMILY RNI-like 267 581 - -
HCH14g0183 1189 SMART LRR_typ_2 701 724 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 318 342 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 391 415 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 725 748 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 489 513 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 537 561 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 562 585 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 418 441 IPR003591 -
HCH14g0183 1189 SMART LRR_typ_2 98 123 IPR003591 -
HCH14g0183 1189 FunFam Brassinosteroid LRR receptor kinase 957 1158 - -
HCH14g0183 1189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1003 1015 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0183 1189 SUPERFAMILY RNI-like 56 311 - -
HCH14g0183 1189 ProSitePatterns Protein kinases ATP-binding region signature. 887 910 IPR017441 GO:0005524(InterPro)
HCH14g0183 1189 CDD STKc_IRAK 887 1156 - -
HCH14g0183 1189 PRINTS Leucine-rich repeat signature 701 714 - -
HCH14g0183 1189 PRINTS Leucine-rich repeat signature 127 140 - -
HCH14g0183 1189 Pfam Brassinosteroid receptor island domain 587 651 IPR045381 -
HCH14g0183 1189 Gene3D Ribonuclease Inhibitor 39 770 IPR032675 -
HCH14g0183 1189 PANTHER RECEPTOR-LIKE PROTEIN 55 461 1151 - -
HCH14g0183 1189 Gene3D Phosphorylase Kinase; domain 1 842 956 - -
HCH14g0183 1189 ProSiteProfiles Protein kinase domain profile. 881 1156 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0183 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 416 596 - -
HCH14g0183 1189 SUPERFAMILY L domain-like 648 767 - -
HCH14g0183 1189 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
HCH14g0183 1189 SMART serkin_6 881 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0183 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 174 415 - -
HCH14g0183 1189 Gene3D Transferase(Phosphotransferase) domain 1 957 1158 - -
HCH14g0183 1189 FunFam serine/threonine-protein kinase BRI1-like 2 842 956 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1388 HCH-Chr10:46454610 HCH14g0183 HCH-Chr14:27506950 2.20E-142 dispersed
HCH11g1206 HCH-Chr11:44365952 HCH14g0183 HCH-Chr14:27506950 1.40E-92 dispersed
HCH13g0776 HCH-Chr13:7154685 HCH14g0183 HCH-Chr14:27506950 2.50E-60 dispersed
HCH14g0183 HCH-Chr14:27506950 HCH1g0107 HCH-Chr1:8283826 3.60E-71 dispersed
HCH14g0630 HCH-Chr14:35005672 HCH14g0183 HCH-Chr14:27506950 1.50E-50 dispersed
HCH8g1443 HCH-Chr8:48959387 HCH14g0183 HCH-Chr14:27506950 2.20E-51 dispersed
HCH14g0183 HCH-Chr14:27506950 HCH4g1243 HCH-Chr4:8488622 7.50E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81217 PF00069 Pkinase 5.60E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0183 K13415 - csv:101209118 1979.53