Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0184 ATGGCATCTGCTTCTCAAGCAGTAGCAAACCAGGTTGGTCTGTTTGAGGATGAAGATCAAGCTTCAACACAAATGGGTTTCTTTTCTTTTCCTCCAAACACCTCCTTTCCTCTAAAACCCTTTATTAGCAGCAACAATATTTCATCAATTGTTGAAACACCAGCTATTTTAACCACTACCAGTAACTTCTCCCATGAAACTCTACTCTCTTCTCTCTCTCCTCTTAAGCACAGAGAAGATCTTCATCATTTAGCTTCTGCTTTTGGGGGAACTCACCTCCTTTCTTTGCAAAGATCAACTTCTTCTTCTACTAATCTCTGGGCATGGAGAGATGACCATGATGTGGGTGAGAGTTTTCTGAGCAAGAAAAATCATTTGAGGGTTTCTACAATGAAGATGAAGAAGATGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGGTTTTGCTTCAAAACAATGAGTGATGTGGATGTTCTTGACGATGGTTACAAGTGGAGGAAGTACGGTCAGAAAGTGGTCAAGAACACACAGCATCCCAGGAGCTATTATCGATGCACGCAAGACAATTGCAGGGTAAAGAAACGAGTTGAGAGATTAGCAGAAGATCCAAGGATGGTGATAACAACCTATGAAGGAAGGCACGTTCATTCTCCTTCACGTGATGATTTGGAAGACACCACTCAGCCTCTAATATCCTCCCACCTTAACAATTTCTTCTGCTAG 723 41.77 MASASQAVANQVGLFEDEDQASTQMGFFSFPPNTSFPLKPFISSNNISSIVETPAILTTTSNFSHETLLSSLSPLKHREDLHHLASAFGGTHLLSLQRSTSSSTNLWAWRDDHDVGESFLSKKNHLRVSTMKMKKMIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSRDDLEDTTQPLISSHLNNFFC 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27738487 27741027 + evm.model.ptg000014l.1024 HCH14g0184 558087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0184 240 SMART WRKY_cls 159 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0184 240 FunFam WRKY transcription factor 57 145 219 - -
HCH14g0184 240 SUPERFAMILY WRKY DNA-binding domain 151 218 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0184 240 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0184 240 Gene3D WRKY domain 146 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0184 240 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0184 240 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 125 222 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0184 HCH-Chr14:27738487 HCH6g1759 HCH-Chr6:50053472 1.40E-27 dispersed
HCH14g0184 HCH-Chr14:27738487 HCH14g0191 HCH-Chr14:28005819 2.90E-20 proximal
HCH7g1795 HCH-Chr7:49521096 HCH14g0184 HCH-Chr14:27738487 6.60E-38 transposed
HCH14g0184 HCH-Chr14:27738487 HCH2g0155 HCH-Chr2:11193089 7.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32898 PF03106 WRKY 1.00E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0184 - - - 0.0