Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0215 ATGACGAGCCAATTTGGGGAATCAACAAGCGTATCACATCAAAACCCCTCTTGTTCTAGTAATAGTGACAACCCTAACAATGATTGTGGTGATTTTGAATGCAATATTTGCTTTGAATTAGCTCAAGACCCGATTATTACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTCCATCATCACTCCCATTACCAAGAATGTCCGGTTTGTAAAGCTCTGGTTCAAGAGGAGAAGTTGGTTCCTCTTTATGGTCGGGGTAAAACCCCGTCTGACCCGAGATTAAAAACGTATCCTGGTATTGATATTCCTAGTCGCCCGGCTGGGCAAAGGCCTGAAACTGCTCCTCCACCAGTTGGTAATGGTAATGGCTTTGCTAACTATAGGATGGGATTCACTGGTGGTTTTATGCCTATGGCGACCGCAAGGATCGGGAACTTCACGTTTGGTACTGGTTTTGGTGGTCTGATACCTTCTTTATTCAACATTCAGTTTCATGGATTTTCTGATGCTACAGCTTATGGAACCACTTCTGGTTTCCCTTATGCATTCAATACATTCAATGGCGGCCACGGCCACAACTTTCCTCCGTCAAATCGAGCACAGCACACCGATAACGTACTGAAAAACCTCCTCTTATTCTTTGGTGTATTCGTAATTCTTGCCTTGATTTGGTGGTAA 690 43.91 MTSQFGESTSVSHQNPSCSSNSDNPNNDCGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSHYQECPVCKALVQEEKLVPLYGRGKTPSDPRLKTYPGIDIPSRPAGQRPETAPPPVGNGNGFANYRMGFTGGFMPMATARIGNFTFGTGFGGLIPSLFNIQFHGFSDATAYGTTSGFPYAFNTFNGGHGHNFPPSNRAQHTDNVLKNLLLFFGVFVILALIWW 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29041364 29042053 + evm.model.ptg000014l.993 HCH14g0215 558118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0215 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
HCH14g0215 229 SUPERFAMILY RING/U-box 30 87 - -
HCH14g0215 229 CDD RING-HC_AtRMA-like 32 76 - -
HCH14g0215 229 SMART ring_2 34 74 IPR001841 -
HCH14g0215 229 MobiDBLite consensus disorder prediction 1 24 - -
HCH14g0215 229 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
HCH14g0215 229 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
HCH14g0215 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
HCH14g0215 229 MobiDBLite consensus disorder prediction 98 123 - -
HCH14g0215 229 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0215 HCH-Chr14:29041364 HCH2g0823 HCH-Chr2:51774507 4.10E-24 dispersed
HCH14g0215 HCH-Chr14:29041364 HCH4g0696 HCH-Chr4:4518971 6.00E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0215 K10666 - csv:101205026 390.963