Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0215 | ATGACGAGCCAATTTGGGGAATCAACAAGCGTATCACATCAAAACCCCTCTTGTTCTAGTAATAGTGACAACCCTAACAATGATTGTGGTGATTTTGAATGCAATATTTGCTTTGAATTAGCTCAAGACCCGATTATTACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTCCATCATCACTCCCATTACCAAGAATGTCCGGTTTGTAAAGCTCTGGTTCAAGAGGAGAAGTTGGTTCCTCTTTATGGTCGGGGTAAAACCCCGTCTGACCCGAGATTAAAAACGTATCCTGGTATTGATATTCCTAGTCGCCCGGCTGGGCAAAGGCCTGAAACTGCTCCTCCACCAGTTGGTAATGGTAATGGCTTTGCTAACTATAGGATGGGATTCACTGGTGGTTTTATGCCTATGGCGACCGCAAGGATCGGGAACTTCACGTTTGGTACTGGTTTTGGTGGTCTGATACCTTCTTTATTCAACATTCAGTTTCATGGATTTTCTGATGCTACAGCTTATGGAACCACTTCTGGTTTCCCTTATGCATTCAATACATTCAATGGCGGCCACGGCCACAACTTTCCTCCGTCAAATCGAGCACAGCACACCGATAACGTACTGAAAAACCTCCTCTTATTCTTTGGTGTATTCGTAATTCTTGCCTTGATTTGGTGGTAA | 690 | 43.91 | MTSQFGESTSVSHQNPSCSSNSDNPNNDCGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSHYQECPVCKALVQEEKLVPLYGRGKTPSDPRLKTYPGIDIPSRPAGQRPETAPPPVGNGNGFANYRMGFTGGFMPMATARIGNFTFGTGFGGLIPSLFNIQFHGFSDATAYGTTSGFPYAFNTFNGGHGHNFPPSNRAQHTDNVLKNLLLFFGVFVILALIWW | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 29041364 | 29042053 | + | evm.model.ptg000014l.993 | HCH14g0215 | 558118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0215 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | IPR013083 | - | |
HCH14g0215 | 229 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
HCH14g0215 | 229 | CDD | RING-HC_AtRMA-like | 32 | 76 | - | - | |
HCH14g0215 | 229 | SMART | ring_2 | 34 | 74 | IPR001841 | - | |
HCH14g0215 | 229 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH14g0215 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - | |
HCH14g0215 | 229 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
HCH14g0215 | 229 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 10 | 221 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
HCH14g0215 | 229 | MobiDBLite | consensus disorder prediction | 98 | 123 | - | - | |
HCH14g0215 | 229 | Pfam | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0215 | HCH-Chr14:29041364 | HCH2g0823 | HCH-Chr2:51774507 | 4.10E-24 | dispersed | |
HCH14g0215 | HCH-Chr14:29041364 | HCH4g0696 | HCH-Chr4:4518971 | 6.00E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0215 | K10666 | - | csv:101205026 | 390.963 |