Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0218 ATGGGAATTATAGCAAAAGGTTCATTGATTTTCTCAAATAAGTTGCCAATTAATTCTATGTCCCAAGATTATCATCATCAAGGAATCTTCAGTTTCTCTAATGGCTTGGATAAATCAGCCACACACCATCATCATCATGAACTTTCTGAACATCATCTTCTTCATGATCATCATCATCATCATCATGGTCGACAACCGTTGACGGAGCACCACCACCTGGCTCAGCAGATCCGCCGTGATAAGCTGAGGGTTCAAAGCTTCGACGACCACCCGCTACCGTTGATGGGTGAAATGGAAGAACAGCCACAACAACTACCATCAGGGCTTCATCATGTATATGAGACACCTTCTACCATGTTATCAGAAATGTTCAATTTCAATCCGGCTGCCGCTACCGCAGCCGTGGAATTCTCCGAACAACACCCGAATTTTCGGTCGTTAAGGGAAGTGCATCCGCATCCGCCACCACCCAACTCAGCTGCGGCTGCCATGCATCTTTTCTTAATGAACCCACCACCGCCACGATCACCATCTCCTCCGTCATCGACCTCGTCGACGCTTCATATGCTTCTTCCGAATCCACCGAGCTCCCTTCAGGGTTTCGAAGGAGGAGGAGGCGGTGGAGACGCAGCCTCTTTCGGCCAATTCAACCAAATTGGTGGAGGAATTGTGGAAGGTCAAGGACTCTCACTCTCACTTCAATCATCTTCTTTACAACACTTGGAAGAGGCAGCAAAAGCACAAGAATTGAGGATTAGAGATGGAGGGTTTCTCTATTACAATCAAGGCCCGGGTGGCGGCGGCGGCGGTGGGGGATCAGGCTCCTCAATATTACAATATTCATCTTCTTATAGAAATTCAGAGAATTCTCTCCATAACTTTCAAAATTCACAAATTGGATTGGGGTCATCAATAGGAGTAGTCAATGTTTTAAGGAACTCCAAATACGTAAAAGCAGCACAAGAATTACTAGAAGAATTTTGTAGTGTTGGAAGGGTTCAGTTGAAGAAAACCACCAAGTCTTCAAGTACTAAACATAATTCAAATCCTGAAGGAAACACCAACGGTAGCGGCGGTGGTGTCGGTGTCGGTATCGGTATAGGCGGCGACTCTTCATCATCCTCTAAGGATCAACTTCCCTTATCAGCTGCTGAAAGAATTGATCATCAGCGGAGGAAGGTCAAACTATTGTCTATGCTTGATGAGGTTGAAAGAAGATACAACCTATATAAAGAACAAATGCAAATGGTGGTGAATTCCTTCGACCTAGTAATGGGGTTCGGCGCGGCGGCGCCGTACACAACGTTGACGCAGAAAGCAATGTCGAGGCATTTCCGGTGCTTGAAAGACGCCATAGCCGTCCAATTGAAGCAAAGCTGTGAGGTTTTAGGAGAGAAAGAAGGAGGAGGAAGCTCAGGGATAACTAAAGGGGAGACGCCGAGGCTGAAGCGGCTGGACCAGAACCTCCGCCATCAAAGAGCGGCGTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGCGACCTCAGCGCGGACTACCCGAGAGATCAGTCACCATTTTGAGGGCTTGGCTTTTTGAGCATTTTCTTCATCCGTATCCCAGCGACGCAGACAAGCATCTCTTATCTAGACAGACTGGTTTATCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCCAGGGTTCGATTGTGGAAACCAATGGTGGAAGAAATGTACCAACTTGAAGGCAAATTTGAAGAAGATGGATCTGAAGACACAGAAAATAAGAACCATGACAGTGCCTTAAATGCACAAAATCCTCTACCACCCACCTCAGCTTCAGCTCCATCGACGCCGCCACCGCCACCATTGGCCACCCCTACCGCCACCTTTGATGCGGAAGCAGCCAGCAGAAGACCGGATATCACTGTGACGGGAAACCAACCAAAGCAACCAACCTCCGCGATGGGCAGCTCAGCAGCAGCAGCCATGTCACGGTGTTTTCCTCCGGCACAAGAGTACGGAGAGCTGCATGATATGTGGCGGCAGGGAAGCATGGTCGCCGGAGATTATGGGACCATATCCGGAGACCAAGGGGCTGACATGAATGGGGCGACATTGATAAGGTTTGGGACCAATAGTACGACGTCTGGAGATGTGTCCCTCACCTTAGGGCTACGCCATGCTGGAAACATGCCGGAGAATACTTCTTTCTCAGTTAGAGACTTTGGAGGTTCTTGA 2223 48.04 MGIIAKGSLIFSNKLPINSMSQDYHHQGIFSFSNGLDKSATHHHHHELSEHHLLHDHHHHHHGRQPLTEHHHLAQQIRRDKLRVQSFDDHPLPLMGEMEEQPQQLPSGLHHVYETPSTMLSEMFNFNPAAATAAVEFSEQHPNFRSLREVHPHPPPPNSAAAAMHLFLMNPPPPRSPSPPSSTSSTLHMLLPNPPSSLQGFEGGGGGGDAASFGQFNQIGGGIVEGQGLSLSLQSSSLQHLEEAAKAQELRIRDGGFLYYNQGPGGGGGGGGSGSSILQYSSSYRNSENSLHNFQNSQIGLGSSIGVVNVLRNSKYVKAAQELLEEFCSVGRVQLKKTTKSSSTKHNSNPEGNTNGSGGGVGVGIGIGGDSSSSSKDQLPLSAAERIDHQRRKVKLLSMLDEVERRYNLYKEQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAVQLKQSCEVLGEKEGGGSSGITKGETPRLKRLDQNLRHQRAAFHQMGMMEQEAWRPQRGLPERSVTILRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKFEEDGSEDTENKNHDSALNAQNPLPPTSASAPSTPPPPPLATPTATFDAEAASRRPDITVTGNQPKQPTSAMGSSAAAAMSRCFPPAQEYGELHDMWRQGSMVAGDYGTISGDQGADMNGATLIRFGTNSTTSGDVSLTLGLRHAGNMPENTSFSVRDFGGS 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29123419 29128875 - evm.model.ptg000014l.990 HCH14g0218 558121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0218 740 Gene3D - 510 572 - -
HCH14g0218 740 SMART prehox3 305 454 IPR006563 -
HCH14g0218 740 MobiDBLite consensus disorder prediction 635 654 - -
HCH14g0218 740 MobiDBLite consensus disorder prediction 634 655 - -
HCH14g0218 740 MobiDBLite consensus disorder prediction 39 70 - -
HCH14g0218 740 CDD homeodomain 507 568 IPR001356 GO:0003677(InterPro)
HCH14g0218 740 ProSiteProfiles 'Homeobox' domain profile. 504 567 IPR001356 GO:0003677(InterPro)
HCH14g0218 740 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 234 594 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g0218 740 MobiDBLite consensus disorder prediction 338 356 - -
HCH14g0218 740 SUPERFAMILY Homeodomain-like 509 575 IPR009057 -
HCH14g0218 740 MobiDBLite consensus disorder prediction 39 54 - -
HCH14g0218 740 MobiDBLite consensus disorder prediction 606 621 - -
HCH14g0218 740 FunFam BEL1-like homeodomain protein 4 510 572 - -
HCH14g0218 740 Pfam Associated with HOX 310 453 IPR006563 -
HCH14g0218 740 Pfam Homeobox KN domain 524 563 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0218 740 SMART HOX_1 507 571 IPR001356 GO:0003677(InterPro)
HCH14g0218 740 MobiDBLite consensus disorder prediction 338 380 - -
HCH14g0218 740 MobiDBLite consensus disorder prediction 170 209 - -
HCH14g0218 740 Coils Coil 393 420 - -
HCH14g0218 740 MobiDBLite consensus disorder prediction 579 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0218 HCH-Chr14:29123419 HCH2g0120 HCH-Chr2:7860613 9.80E-136 dispersed
HCH14g0218 HCH-Chr14:29123419 HCH2g0479 HCH-Chr2:48310821 1.30E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32900 PF07526 POX 1.60E-47 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0218 - - - 0.0