Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0246 ATGACTTCGGATACCGGCGACGACCGCAAGACGGCGAAAACCCATCACAACCAAGGAGGTCCACCGCCGGAACAAGAACATCTCCCTTGTCCCAGATGTGATTCGACGAATACCAAGTTTTGTTATTACAATAACTATAACTTCTCTCAGCCTAGACACTTTTGTAAGTCTTGCCGTCGTTATTGGACTCACGGTGGCACGCTGCGTGACATCCCAGTCGGTGGTGGCAGCCGTAAGAATGCTAAACGCTCTCGTACTTGTATCCCCACGTCGGCGGTCACTTCTTCTTCTTCTACTTCTGGTTCCATGATGACTCACCCTTTGCCGGCTACCCCACTTTTGGTGCCTCTTGGGTCTTCCGTACAATTTGGCGGCGGTGTTGGTGGGGTGGAAATGAAGGCGAATGGGAATGTGTGTGGGAGTTTTACGTCGTTGCTTAATGCTCATGGGCCTGGGTTTTGGAGTGTAGGTGGGTTTGGGCTTGGGCTTGGGAATGGATTTGAGGAAGTGGGTTATGGGCCTTCTAGAGTGGCTTGGCCTTTTTTGGGTTTAAGTGACGGCGGCGGCGGCGGAGGTGGTGGGAATGGTGGTCCGGTGAACACGTGGCAGTTTGAGAATGGTGATGGTGGATTTGTGAGTGGTGATTGTTTGTCTTGGCCTGAATTGGCTATTTCTACTCCTGCTGGGAATTGTCTCAAATGA 702 51.57 MTSDTGDDRKTAKTHHNQGGPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTCIPTSAVTSSSSTSGSMMTHPLPATPLLVPLGSSVQFGGGVGGVEMKANGNVCGSFTSLLNAHGPGFWSVGGFGLGLGNGFEEVGYGPSRVAWPFLGLSDGGGGGGGGNGGPVNTWQFENGDGGFVSGDCLSWPELAISTPAGNCLK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29974551 29975252 + evm.model.ptg000014l.962 HCH14g0246 558149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0246 233 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 MobiDBLite consensus disorder prediction 1 15 - -
HCH14g0246 233 MobiDBLite consensus disorder prediction 1 30 - -
HCH14g0246 233 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 99 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0246 HCH-Chr14:29974551 HCH4g0680 HCH-Chr4:4418109 1.70E-46 dispersed
HCH14g0246 HCH-Chr14:29974551 HCH14g0253 HCH-Chr14:30295112 1.90E-24 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32908 PF02701 zf-Dof 3.10E-33 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0246 - - - 0.0