Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0246 ATGACTTCGGATACCGGCGACGACCGCAAGACGGCGAAAACCCATCACAACCAAGGAGGTCCACCGCCGGAACAAGAACATCTCCCTTGTCCCAGATGTGATTCGACGAATACCAAGTTTTGTTATTACAATAACTATAACTTCTCTCAGCCTAGACACTTTTGTAAGTCTTGCCGTCGTTATTGGACTCACGGTGGCACGCTGCGTGACATCCCAGTCGGTGGTGGCAGCCGTAAGAATGCTAAACGCTCTCGTACTTGTATCCCCACGTCGGCGGTCACTTCTTCTTCTTCTACTTCTGGTTCCATGATGACTCACCCTTTGCCGGCTACCCCACTTTTGGTGCCTCTTGGGTCTTCCGTACAATTTGGCGGCGGTGTTGGTGGGGTGGAAATGAAGGCGAATGGGAATGTGTGTGGGAGTTTTACGTCGTTGCTTAATGCTCATGGGCCTGGGTTTTGGAGTGTAGGTGGGTTTGGGCTTGGGCTTGGGAATGGATTTGAGGAAGTGGGTTATGGGCCTTCTAGAGTGGCTTGGCCTTTTTTGGGTTTAAGTGACGGCGGCGGCGGCGGAGGTGGTGGGAATGGTGGTCCGGTGAACACGTGGCAGTTTGAGAATGGTGATGGTGGATTTGTGAGTGGTGATTGTTTGTCTTGGCCTGAATTGGCTATTTCTACTCCTGCTGGGAATTGTCTCAAATGA 702 51.57 MTSDTGDDRKTAKTHHNQGGPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTCIPTSAVTSSSSTSGSMMTHPLPATPLLVPLGSSVQFGGGVGGVEMKANGNVCGSFTSLLNAHGPGFWSVGGFGLGLGNGFEEVGYGPSRVAWPFLGLSDGGGGGGGGNGGPVNTWQFENGDGGFVSGDCLSWPELAISTPAGNCLK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29974551 29975252 + evm.model.ptg000014l.962 HCH14g0246 558149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0246 233 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 MobiDBLite consensus disorder prediction 1 15 - -
HCH14g0246 233 MobiDBLite consensus disorder prediction 1 30 - -
HCH14g0246 233 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0246 233 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 99 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0246 HCH-Chr14:29974551 HCH4g0680 HCH-Chr4:4418109 1.70E-46 dispersed
HCH14g0246 HCH-Chr14:29974551 HCH14g0253 HCH-Chr14:30295112 1.90E-24 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006049 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32908 PF02701 zf-Dof 3.10E-33 No_clan HCH TF