Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0260 ATGCGTTGGTTGCGTAATATCCCCTTTACTAATTCTCAAACAGCGAGATCTCCGACCAAGACCACTAACTCCGGCGGTGATTCTCCGACGAGAAGAGCCTCCACCGACGATCATAATTATCGTGGTGCATGGCGTTTTGGTACTTCTAAATATTCACGTCATAGGAAGCTTCGTAATCTAAGTGAACGTGAAGTTGTTGCTGCTGCTTCTTCTTCTTTGGCTAAATGGTCTAAATATTCTACGCCTCAACCTGTTCCTAATCCTGACCATGCTGTTCCTTTGCCACTTCCTGAATTACCCTCTATTTTTCAACGTCGTGAAAAGTTCTTGAATCATTCTAGACTTGGAGATGGAGACTGCTGCCCTCTTCCCTCTCCTAAGACTATTTCTAACCAAAGAAGCGTCGAAGAGCGCGATGGAGATGGAGATGGAGATGAAGATAGAGATACATGTCGAGATCGAGATCGACATACAGATAGAGATAGAGCTTCCCCTGCTTTTAAATTTGGTGCTGGAGCTTACTCAAATGATCATCCCATTAAAAGTGTATTTGATTCTGGGGAGAGGCACAAGAAAGAAGATCATGTTGAAATGAGGTCATCTTGGAGCGTGCAACAAGATCTGAATGGATATTCTGAAAGATCAAAAAGCAGTTTTAGGATTGATATTCCTAGTAGGAGTGCTCCTAGTAGTCCTTTTGCCAGTCCTATTATTAGTCCTCAAAGAAATAGTTCCGGCAATATTTCGAATTACTATTATTTGGTTCCTGTTGGAAATCAAGGCTGGTCTGCACCTGAGATTGCATCTAATTCGGTAGTGATGACCGGGTTTCCTCCTGTAATTTTCGAACGTTCTGCTCTTAGTACAGAGAGTTCTCCTATACATAGCCCGAGAGTTCGAAGTCCTCATCGAGATCCTAGAAGTCCTCATCGAGATCCTAGAAGTCCCCATCGAGATCCCAGAAGTCCCCATCGAGATCCCAGAAGTCCATCAAGACCTGCATCTCCATTGCACTCCAAGGCATCTCTTGAAACACATGCTGCACGTCGTGAAAATTCTGCTCCTATCAATGTACACCCCTTACCTCTTCCACCTGGAGCATCGATGCCTTCACCATCGGCCCCGATTACACAAGCTAACACTAAAACTGAGTCATTCACAAGGAAAAATCAATGGCAAAAAGGAAAGCTTATTGGTCGCGGCACATTCGGAAGCGTTTATGTTGCAAGCAACAGGGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTTTTGATGATCCAAAGTCAGCTGAGAGCATAAAGCAGTTAGAACAGGAGATCAAAGTTCTGAGCCAGCTGAAGCATCCAAATATTGTCCAATATTATGGCAGTGATATTGTTGAAGATCGATTGTATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACACTGCGGAACTATGACCGAATCTGTTGTTCGGAATTTTACTCGTCACATTCTCTCCGGGCTGGCTTATTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTACTAGTAGACTCTTCCGGTGTTGTCAAGCTTGCTGACTTCGGAATGGCGAAACATCTTGCTGGACCAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATATTGGATGGCTCCTGAGCTCTTGCTTTCTGTGATGCATAAAGATAACAACTCTGATCTTGCTCTAGCTGTTGATATATGGAGTCTTGGTTGCACTATTATAGAAATGTTCACCGGAAAGCCCCCGTGGAGCGAGTTTGAAGGGGCTGCAGCCATGTTTAAGGTTATGAGGGATACTCCACCAATACCTGAATCCTTATCATTTGAAGGCAAAGATTTTTTAAGATGCTGCTTTCAGAGAAATCCTGCAGAGAGGCTTTCTGCTGCCTTGCTGCTGGAACATCCTTTTGTGAAAAACTTGCAGCAGCTAGATGTTCCATCTTGCTCTCAGGCATTCAATGGAGTAAATTTGTTGGATAAATGCTATAGTCCAAGAGAGCATTATTCAAGTAAACCAGATCAGGTTCCTATACTTCCAAACTCACAAATTTCAAAGGGAAAGTTGACTATTGAGAGTGTGATTGGCCAACTATCTCATCATGAAACCTCTGACTTAACAGTAACTTCTCGCCATTCCCCTCGTTCCACCCTTGACGCTCTTCCGGTCTTATCTCCACCGCGCTCGGTTCAAAATGTGCATCATCATCAACAACATCCTCCTCATCATCTTAGTCCTTCTGCAAACATGCTCAGTGTTGTCAATCAGAGCAATAAGAAGAGCTATACATTGAGATAG 2343 43.15 MRWLRNIPFTNSQTARSPTKTTNSGGDSPTRRASTDDHNYRGAWRFGTSKYSRHRKLRNLSEREVVAAASSSLAKWSKYSTPQPVPNPDHAVPLPLPELPSIFQRREKFLNHSRLGDGDCCPLPSPKTISNQRSVEERDGDGDGDEDRDTCRDRDRHTDRDRASPAFKFGAGAYSNDHPIKSVFDSGERHKKEDHVEMRSSWSVQQDLNGYSERSKSSFRIDIPSRSAPSSPFASPIISPQRNSSGNISNYYYLVPVGNQGWSAPEIASNSVVMTGFPPVIFERSALSTESSPIHSPRVRSPHRDPRSPHRDPRSPHRDPRSPHRDPRSPSRPASPLHSKASLETHAARRENSAPINVHPLPLPPGASMPSPSAPITQANTKTESFTRKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFFDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGTMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLAGPVADLSLKGSPYWMAPELLLSVMHKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEFEGAAAMFKVMRDTPPIPESLSFEGKDFLRCCFQRNPAERLSAALLLEHPFVKNLQQLDVPSCSQAFNGVNLLDKCYSPREHYSSKPDQVPILPNSQISKGKLTIESVIGQLSHHETSDLTVTSRHSPRSTLDALPVLSPPRSVQNVHHHQQHPPHHLSPSANMLSVVNQSNKKSYTLR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 30500614 30504968 + evm.model.ptg000014l.948 HCH14g0260 558163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0260 780 MobiDBLite consensus disorder prediction 114 242 - -
HCH14g0260 780 ProSiteProfiles Protein kinase domain profile. 392 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0260 780 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 149 657 IPR050538 -
HCH14g0260 780 Gene3D Transferase(Phosphotransferase) domain 1 388 675 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 718 780 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 72 91 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 182 200 - -
HCH14g0260 780 SUPERFAMILY Protein kinase-like (PK-like) 374 696 IPR011009 -
HCH14g0260 780 MobiDBLite consensus disorder prediction 372 389 - -
HCH14g0260 780 Pfam Protein kinase domain 393 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0260 780 MobiDBLite consensus disorder prediction 288 389 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 201 242 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 297 328 - -
HCH14g0260 780 FunFam Mitogen-activated protein kinase kinase kinase 5 389 690 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 1 41 - -
HCH14g0260 780 ProSitePatterns Protein kinases ATP-binding region signature. 398 421 IPR017441 GO:0005524(InterPro)
HCH14g0260 780 MobiDBLite consensus disorder prediction 1 30 - -
HCH14g0260 780 MobiDBLite consensus disorder prediction 132 164 - -
HCH14g0260 780 SMART serkin_6 392 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0260 780 MobiDBLite consensus disorder prediction 757 780 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0125 HCH-Chr14:22616578 HCH14g0260 HCH-Chr14:30500614 8.40E-88 dispersed
HCH14g0260 HCH-Chr14:30500614 HCH5g0821 HCH-Chr5:6454165 2.50E-97 dispersed
HCH14g0260 HCH-Chr14:30500614 HCH4g0675 HCH-Chr4:4388153 4.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81222 PF00069 Pkinase 2.20E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0260 - - - 0.0