Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH14g0267 | ATGCCTTCAAAGACCAAGAAACACTCAAAAACGCCGTCTAAATTATCATCAAACTCAGACAACTCTCATTCTCCAGTGACACCTCCTCCTCATGCTGCTGCTGAAGATGATTTTCTTTCCTATCTTGAAGAAGCTTCAATTAAATATCCTTCTTTTATTGATACCTCTGCTTTCATTGGTCAAGTTACTAATTCTCAAGTCCAGTCTACTGGTTGTAAACTTTGGCTTTCTGAATCTTCAATGCTTTCCTCTAACTTCACCCAAGGGTCTATCGTCTCGGTGGCATTGGCTTCTAAGAGAGGGAATGTTTCAGATGGATTTCCTCTCTCCTCATTAGTTGATGAATATGGTAGACGATTTGGAGTTGATTGTGGATATTCATTAACTAATGAAGCAGGGAAGTACTTTGCTCTTGCGAGAATTTTTTCTTCTAGTAAGGAAGCAAAGAATGGAGTTCAATTATCAACAAGCCTTTCATATACATTAGGTTGCCCTACATTAGGCAGTGTTGTTTTTATCTTCCCTTTAAAACATCATTTTTGTGATGGTTTGTTAAATGAGAATGGAAAATTAAAGAGCACAAAAGTAGATTCTCTCGGGATAAACTATTGTAAGGAACTTTTCCTGGAGTTGATTTCTTCTACCAATATATTAATGAGAAATAGTGAGGTGTCTTCCTCCACTATTTGTTCAGAAAAGATTCGTGGTCGTGGTGAAAATGGTAATTTAGCATCTCCAAGAACTCCCTTTTATCAATCAAAGCTAAGTCCTCTTTCTACTAAGCTATCCGCTTCACCAAATTGTGATGACTCAGTATCAAGTTTAGCAAATGTAGATAGTTCATCTTCACACTCACTTATTATAGACGCATTAGGAGAAGATAGTGTTAGAAAACTAGTACAAACCATTGCTTCCCATGAATTAAATTCACGTTGTTTACTCCTTGGAAATCTTATTACTCTACCAGTGCTTTCGGATTTTTGTACTTTCTTGGTTAGGGGTGGGAAAGGATTGTTAGTAGATGGTGACTCTCATGATTCTCTGCATACTGGAAGTAGCAATCATTCTCAATCTTATGTGTCAGACGAATATGGGAATTGTGCTTTCACTATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCAAGGTTTCGAAGACGACACAAAAGAGAGTTCTAGCAGATGTGAAACTTGAAAATCTAAACACTAGAGCTAAAGTAGAATGTGAAGTTTTGAAATTAGGTGGACTTTCTAAAGAATATTCAATTTTGAAGGACATTATAATTGGCTGTTCGTTAAAAGGCACCTTATCAAGTCTTGGTTTACGAACTACAAAGGGATTGCTTCTTCATGGCCCACCTGGAACAGGAAAAACTTCTTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATCCTATTTGAACGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAAAAGGCTTTGCATGAAGTTTTTGAGGCAGCAAGCCAAGTTGCACCTTCTGTGATATTCATCGATGAGTTAGATGCTATTGCACCTGCCAGGAAAGATGGTGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAGTCGAAGTGATGGGCCACTAATAATTGCTTCTACCAACAGGCCTGATAGCATTGAACCTGCACTAAGGCGGCCTGGGAGACTTGACAAGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGCTTGGATATTCTACTTACTATTCTTAGTGAAATGGAACATTCTCTTTCAGATTTGCAAGTTCAACATCTTGCCATGGTTACACATGGTTTTGTTGGCGCTGATTTGGCTTCCCTTTGCAATGAGGCGGCTTTAAATTGTATTAGGCGTTATCATGAGTCTAAAAAGTTTATAGAATGTTTAAGTTTTGGTAGATCAATTGTAGCGGGTGAAGGTTCTTCTGATGACACTATTGAAGAGCCTGTTTTTTTAAAAGACATTAGCCATATCTCAGGGGATTGCTCTAGTTCTGCAACTTCAGCAATCTTTGGATTTTCTGTTTCATCCGAGACTCTAACATCTGTGTCCTTGAATGAAGTGGTAGATGATAATGAAGAGATTTATAGCCCTGCCAAAATCAACGGTAGATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGGGAGGTCATACTTGAAGTTCCCAAGGTAAAATGGGAAGATGTTGGTGGCCAAAGAGAGGTTAAGACTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAATATCAGGATGCATTCAAGCGTATAGGGACTCGACCTCCGACAGGAGTCCTGATGTTTGGCCCTCCTGGTTGCAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTTCTTGCAGTCAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCTCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGAGGTTTCTGTTTCTGATAGAGTTATGAGTCAGCTTCTGGTTGAGTTGGATGGTTTACATCAAAGAGTTGGTATTACTGTCATTGCTGCTACCAATCGACCGGATAAGATTGATCCAGCCCTTCTAAGACCAGGACGTTTTGACCGGCTGATATATGTTGGGCCACCAAATGAATCTGATCGGGAAGAGATATTCCGCATCCATTTGCGCAGAATTCCTTACAGCCCAGATATCAGTATAATGAAGCTGGCTTCTCTTACTCAAGGCTATACCGGGGCAGACATATCATTAATCTGTAGAGAAGCAGCTTTAGCTGCTCTAGAGGAGAGCTTTGAGGCTTCAGAAATAAATATGCAACATTTAGAAACTGCAATTAGACATGTGAAGCCATCGGAAACTGAAGCTTATCAAGAGTTATCAGACAGGTTTCAAAGGCTTGTTCGTTCTACTTCCAGCTCACAAGGAGCTGAAGTTGGGTATCAACAATGTGCAAAAGAATCTAACCGGTTTTCTATTCACTAA | 3126 | 39.64 | MPSKTKKHSKTPSKLSSNSDNSHSPVTPPPHAAAEDDFLSYLEEASIKYPSFIDTSAFIGQVTNSQVQSTGCKLWLSESSMLSSNFTQGSIVSVALASKRGNVSDGFPLSSLVDEYGRRFGVDCGYSLTNEAGKYFALARIFSSSKEAKNGVQLSTSLSYTLGCPTLGSVVFIFPLKHHFCDGLLNENGKLKSTKVDSLGINYCKELFLELISSTNILMRNSEVSSSTICSEKIRGRGENGNLASPRTPFYQSKLSPLSTKLSASPNCDDSVSSLANVDSSSSHSLIIDALGEDSVRKLVQTIASHELNSRCLLLGNLITLPVLSDFCTFLVRGGKGLLVDGDSHDSLHTGSSNHSQSYVSDEYGNCAFTIDQLTKVFINVQSTKVSKTTQKRVLADVKLENLNTRAKVECEVLKLGGLSKEYSILKDIIIGCSLKGTLSSLGLRTTKGLLLHGPPGTGKTSLAQLCAHDAGVNLSYLNGPEIISQYHGESEKALHEVFEAASQVAPSVIFIDELDAIAPARKDGGEELSQRIVATLLNLMDGISRSDGPLIIASTNRPDSIEPALRRPGRLDKEIEIGVPSPNQRLDILLTILSEMEHSLSDLQVQHLAMVTHGFVGADLASLCNEAALNCIRRYHESKKFIECLSFGRSIVAGEGSSDDTIEEPVFLKDISHISGDCSSSATSAIFGFSVSSETLTSVSLNEVVDDNEEIYSPAKINGRLKVVFEDFEMARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKYQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDEVSVSDRVMSQLLVELDGLHQRVGITVIAATNRPDKIDPALLRPGRFDRLIYVGPPNESDREEIFRIHLRRIPYSPDISIMKLASLTQGYTGADISLICREAALAALEESFEASEINMQHLETAIRHVKPSETEAYQELSDRFQRLVRSTSSSQGAEVGYQQCAKESNRFSIH | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 30652896 | 30680070 | - | evm.model.ptg000014l.941 | HCH14g0267 | 558170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH14g0267 | 1041 | Gene3D | - | 924 | 994 | - | - | |
| HCH14g0267 | 1041 | Coils | Coil | 972 | 992 | - | - | |
| HCH14g0267 | 1041 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| HCH14g0267 | 1041 | Pfam | AAA+ lid domain | 945 | 990 | IPR041569 | - | |
| HCH14g0267 | 1041 | Pfam | AAA+ lid domain | 603 | 639 | IPR041569 | - | |
| HCH14g0267 | 1041 | Gene3D | - | 580 | 711 | - | - | |
| HCH14g0267 | 1041 | ProSitePatterns | AAA-protein family signature. | 893 | 911 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH14g0267 | 1041 | Gene3D | - | 391 | 579 | IPR027417 | - | |
| HCH14g0267 | 1041 | FunFam | calmodulin-interacting protein 111 isoform X1 | 748 | 923 | - | - | |
| HCH14g0267 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 749 | 1008 | IPR027417 | - | |
| HCH14g0267 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 416 | 639 | IPR027417 | - | |
| HCH14g0267 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| HCH14g0267 | 1041 | Gene3D | - | 748 | 1000 | IPR027417 | - | |
| HCH14g0267 | 1041 | SMART | AAA_5 | 446 | 582 | IPR003593 | GO:0016887(InterPro) | |
| HCH14g0267 | 1041 | SMART | AAA_5 | 787 | 925 | IPR003593 | GO:0016887(InterPro) | |
| HCH14g0267 | 1041 | PANTHER | AAA-FAMILY ATPASE | 72 | 1011 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
| HCH14g0267 | 1041 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 924 | 1008 | - | - | |
| HCH14g0267 | 1041 | Pfam | ATPase family associated with various cellular activities (AAA) | 450 | 579 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH14g0267 | 1041 | Pfam | ATPase family associated with various cellular activities (AAA) | 791 | 922 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH14g0267 | 1041 | FunFam | Putative vesicular transport protein (CDC48) | 400 | 579 | - | - | |
| HCH14g0267 | 1041 | CDD | RecA-like_CDC48_r2-like | 762 | 921 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0267 | HCH-Chr14:30652896 | HCH9g1291 | HCH-Chr9:39800558 | 0.00E+00 | dispersed | |
| HCH14g0267 | HCH-Chr14:30652896 | HCH9g0568 | HCH-Chr9:3732070 | 6.20E-120 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH14g0267 | - | - | - | 0.0 |