Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0291 | ATGGACGAATCCTACCATTTTCATAAACTTCCATCTTCTTCTTCTTCTTCTACGTCACCATCAACTTTTCCGGCCACCGTTTCCTCCTCCCCGTCTTCTCCTCCCGACGAAATCTCTCTTTTTCTCCAACAGTTTTTACTCCGTACATCTTCTTCTCCATCCCTCACCGGAAAACAACCCCATTGCTCTTTACTCTCATCCCCACCTTCCATTTTCTCCAACACTCACCCTTCTTACGGAGGTAACGAGATCTCAGCCGTTGATTCTTACCTGAGACCCAATACTGTAAATGCATCTTCTTCTTCGGTTGGTGCAAGTGAAAACGAGAACGATGAGTTTGACTGTGAAAGTGAGGAGGGTTTGATGGAAGAGATTCCTACAAAGTGTAATAATCGTAGTTCTTCTAAAAGAAGTAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGGAGAAGAAGCAGAATTAATGAGAAAATGAAGGCCTTGCAAAATTTGATTCCTAATTCCAATAAGACAGATAAGGCCTCGATGCTGGACGAAGCAATCGAATATCTCAAGCAGCTTCAACTTCAAGTACAGATGTTAACAATGAGAAATGGACTGAGTTTGCATCCAATGAGCTTACCTGGAAGTCTGCAATATCTCCAATTTTCCCACATGAGAATGAACTTTGGTGAAGAAAATAGTTCACTTCCTACAGACCAAGAAAGATCAACCCAGATTGTCTTCAGTTTAGCAGACCAAAGGACTACCTCAAACCATCAGCTCACGGCAGGCATCGATAAAATTGATGCAGAAGCTCCATTCAAGTTGCAGCCATCAATCCAGGCTCACTTTGCACCCTTTTACTTGAGTGAATCCTCCAAGGTAAAACTTGAGCAACCCTTCAATACAAAACCCAAAAGGGAATATATTCGATTTTTTCTGTGTTTGCATATGAAGGATATTTGCAGAGAAGATGTGCTGCGAGATAGGCAAGTAAGCATGAATCAGCGAAACACGACTCCTTTCGTATCACCCCCTTATAATATGGCAGCAGCTGAACTACAGAATAGTGTTCCTGTGGAACAATGCATCATTGAAGGAGATCATTCAGCATTGACACAGGAAGGGCTGCACCAAGTGAAACAATAG | 1134 | 42.24 | MDESYHFHKLPSSSSSSTSPSTFPATVSSSPSSPPDEISLFLQQFLLRTSSSPSLTGKQPHCSLLSSPPSIFSNTHPSYGGNEISAVDSYLRPNTVNASSSSVGASENENDEFDCESEEGLMEEIPTKCNNRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPMSLPGSLQYLQFSHMRMNFGEENSSLPTDQERSTQIVFSLADQRTTSNHQLTAGIDKIDAEAPFKLQPSIQAHFAPFYLSESSKVKLEQPFNTKPKREYIRFFLCLHMKDICREDVLRDRQVSMNQRNTTPFVSPPYNMAAAELQNSVPVEQCIIEGDHSALTQEGLHQVKQ | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 31384986 | 31387897 | - | evm.model.ptg000014l.917 | HCH14g0291 | 558194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0291 | 377 | Gene3D | - | 134 | 198 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0291 | 377 | FunFam | Basic helix-loop-helix transcription factor | 134 | 197 | - | - | |
HCH14g0291 | 377 | CDD | bHLH_AtPIF_like | 139 | 201 | IPR047265 | - | |
HCH14g0291 | 377 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 23 | 289 | IPR031066 | GO:0005634(PANTHER) | |
HCH14g0291 | 377 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0291 | 377 | SMART | finulus | 145 | 194 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0291 | 377 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
HCH14g0291 | 377 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 136 | 199 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0291 | 377 | MobiDBLite | consensus disorder prediction | 135 | 151 | - | - | |
HCH14g0291 | 377 | Coils | Coil | 178 | 198 | - | - | |
HCH14g0291 | 377 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 189 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0291 | 377 | MobiDBLite | consensus disorder prediction | 96 | 151 | - | - | |
HCH14g0291 | 377 | MobiDBLite | consensus disorder prediction | 8 | 35 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0912 | HCH-Chr12:6156437 | HCH14g0291 | HCH-Chr14:31384986 | 1.70E-23 | dispersed | |
HCH14g0291 | HCH-Chr14:31384986 | HCH5g0958 | HCH-Chr5:8488715 | 2.30E-24 | dispersed | |
HCH14g0291 | HCH-Chr14:31384986 | HCH4g0628 | HCH-Chr4:4118902 | 3.30E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32915 | PF00010 | HLH | 4.30E-14 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0291 | - | - | - | 0.0 |