Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0291 ATGGACGAATCCTACCATTTTCATAAACTTCCATCTTCTTCTTCTTCTTCTACGTCACCATCAACTTTTCCGGCCACCGTTTCCTCCTCCCCGTCTTCTCCTCCCGACGAAATCTCTCTTTTTCTCCAACAGTTTTTACTCCGTACATCTTCTTCTCCATCCCTCACCGGAAAACAACCCCATTGCTCTTTACTCTCATCCCCACCTTCCATTTTCTCCAACACTCACCCTTCTTACGGAGGTAACGAGATCTCAGCCGTTGATTCTTACCTGAGACCCAATACTGTAAATGCATCTTCTTCTTCGGTTGGTGCAAGTGAAAACGAGAACGATGAGTTTGACTGTGAAAGTGAGGAGGGTTTGATGGAAGAGATTCCTACAAAGTGTAATAATCGTAGTTCTTCTAAAAGAAGTAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGGAGAAGAAGCAGAATTAATGAGAAAATGAAGGCCTTGCAAAATTTGATTCCTAATTCCAATAAGACAGATAAGGCCTCGATGCTGGACGAAGCAATCGAATATCTCAAGCAGCTTCAACTTCAAGTACAGATGTTAACAATGAGAAATGGACTGAGTTTGCATCCAATGAGCTTACCTGGAAGTCTGCAATATCTCCAATTTTCCCACATGAGAATGAACTTTGGTGAAGAAAATAGTTCACTTCCTACAGACCAAGAAAGATCAACCCAGATTGTCTTCAGTTTAGCAGACCAAAGGACTACCTCAAACCATCAGCTCACGGCAGGCATCGATAAAATTGATGCAGAAGCTCCATTCAAGTTGCAGCCATCAATCCAGGCTCACTTTGCACCCTTTTACTTGAGTGAATCCTCCAAGGTAAAACTTGAGCAACCCTTCAATACAAAACCCAAAAGGGAATATATTCGATTTTTTCTGTGTTTGCATATGAAGGATATTTGCAGAGAAGATGTGCTGCGAGATAGGCAAGTAAGCATGAATCAGCGAAACACGACTCCTTTCGTATCACCCCCTTATAATATGGCAGCAGCTGAACTACAGAATAGTGTTCCTGTGGAACAATGCATCATTGAAGGAGATCATTCAGCATTGACACAGGAAGGGCTGCACCAAGTGAAACAATAG 1134 42.24 MDESYHFHKLPSSSSSSTSPSTFPATVSSSPSSPPDEISLFLQQFLLRTSSSPSLTGKQPHCSLLSSPPSIFSNTHPSYGGNEISAVDSYLRPNTVNASSSSVGASENENDEFDCESEEGLMEEIPTKCNNRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPMSLPGSLQYLQFSHMRMNFGEENSSLPTDQERSTQIVFSLADQRTTSNHQLTAGIDKIDAEAPFKLQPSIQAHFAPFYLSESSKVKLEQPFNTKPKREYIRFFLCLHMKDICREDVLRDRQVSMNQRNTTPFVSPPYNMAAAELQNSVPVEQCIIEGDHSALTQEGLHQVKQ 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 31384986 31387897 - evm.model.ptg000014l.917 HCH14g0291 558194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0291 377 Gene3D - 134 198 IPR036638 GO:0046983(InterPro)
HCH14g0291 377 FunFam Basic helix-loop-helix transcription factor 134 197 - -
HCH14g0291 377 CDD bHLH_AtPIF_like 139 201 IPR047265 -
HCH14g0291 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 289 IPR031066 GO:0005634(PANTHER)
HCH14g0291 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983(InterPro)
HCH14g0291 377 SMART finulus 145 194 IPR011598 GO:0046983(InterPro)
HCH14g0291 377 MobiDBLite consensus disorder prediction 1 35 - -
HCH14g0291 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983(InterPro)
HCH14g0291 377 MobiDBLite consensus disorder prediction 135 151 - -
HCH14g0291 377 Coils Coil 178 198 - -
HCH14g0291 377 Pfam Helix-loop-helix DNA-binding domain 142 189 IPR011598 GO:0046983(InterPro)
HCH14g0291 377 MobiDBLite consensus disorder prediction 96 151 - -
HCH14g0291 377 MobiDBLite consensus disorder prediction 8 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0912 HCH-Chr12:6156437 HCH14g0291 HCH-Chr14:31384986 1.70E-23 dispersed
HCH14g0291 HCH-Chr14:31384986 HCH5g0958 HCH-Chr5:8488715 2.30E-24 dispersed
HCH14g0291 HCH-Chr14:31384986 HCH4g0628 HCH-Chr4:4118902 3.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32915 PF00010 HLH 4.30E-14 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0291 - - - 0.0