Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0298 | ATGTGGGATCTTAATGATTCTCCTGATCAAAGAGGAGACAATGAATCGGAGGGCTGTTCTTCTCCAAAGACTTCTATTGATGGAGATGATGAAAAGGGTAAGAGGGTTGGATCCGTTTCTAATTCTAGTTCTTCGGCTGTTGTCGTGGAAGACGGATCCGATGATGATGGAGATGTCGGAAAAACATTTGGATTTTCTGCTGATGATTCTATGGAAATTGATACGCCTGTCACTCATCAGTTTTTTCCAGTCGAAGAGAGTGAAATGAGCGGTGGTGATGCGGTTGCGGTTGGTGGTGGTGACGGCGGCAGTGGCGGTGGCGGTGGCGGTGGAGGAACAGGTTCTTCTTTCCCTCGAGCTCACTGGGTTGGGGTTAAATTCTGTCATCCTGATCCTCTAGGCGGTGGTTCAACGAAACCGGTGGAGATTTCACAGCCGATGAAAAAGAGCCGCCGTGGTCCTAGGTCCCGGAGCTCTCAATATCGTGGCGTTACTTTCTACCGGAGAACCGGCCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTTTATCTTGGTGGATTCGATACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCCGCCATTAAATTCCGAGGAGTAGAAGCAGACATAAACTTCAGTATCGAAGATTACGAGGACGATTTAAAACAGATGGGGAATTTAACAAAGGAAGAATTCGTGCATGTACTTCGCCGACAAAGCACTGGTTTCCCAAGAGGAAGCTCCAAGTATAGAGGTGTAACGTTACATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTCTAGGCAAAAAATATGTGTATCTGGGTTTGTTTGATACAGAAATTGAAGCTGCAAGGGCTTATGATAAAGCTGCAATTAAATGTAATGGCAAAGACGCTGTCACTAATTTCGATCCCACCATCTATGAGAATGAGCTCAATCCGACAACTGATTCAATCAGCAATTTGACCGATCATAGTCTTGATTTGAGTTTGGGAAATAATTCGATCTCGAAGCAAAACGACAGCCCACGAGCTGCCGTCGCTATTGATCACCACCATCACCATCACCAACACCAACACCAACACTCTTCTGCATCTTCATCGTCATCTATGCTCAACTTGCTGCAAGATTCAAGCGGAGGAGCAAATAGTAACAATAACAATCATCATCAATATAGTAGTAACAATGCACAAAGAAGAAATCGGTACTTGGAGAGTGAAACCATGCAGCTTCTCAGCCAAACACACATTCAATCTCCGGTAGGAGGTTCGTTTGAAATGCGACACGGGCAACTCAGCCGATCGCAGGCCGCCACCGGAGATCAGTCTCAAATATTGCTTCAAAGTCACAGTCCAAGCCTCAATTCTTTGAATTATCAAAGTCAGTTTTCAGGCAGCAGTAATGGAGGGAGAATAGGAAGTGATCTATCACTATCTATGAGTGATCAAAATCAAATTCTTGTTCTCCAATCCGGGCCTTCTTCTCATAATTCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCGCAGATTAGACCTTCTAAAAATTGGCTGCAGAAGAACGGGTTTCACTGTCTCATGAGACCCTCCTGA | 1617 | 45.27 | MWDLNDSPDQRGDNESEGCSSPKTSIDGDDEKGKRVGSVSNSSSSAVVVEDGSDDDGDVGKTFGFSADDSMEIDTPVTHQFFPVEESEMSGGDAVAVGGGDGGSGGGGGGGGTGSSFPRAHWVGVKFCHPDPLGGGSTKPVEISQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPTIYENELNPTTDSISNLTDHSLDLSLGNNSISKQNDSPRAAVAIDHHHHHHQHQHQHSSASSSSSMLNLLQDSSGGANSNNNNHHQYSSNNAQRRNRYLESETMQLLSQTHIQSPVGGSFEMRHGQLSRSQAATGDQSQILLQSHSPSLNSLNYQSQFSGSSNGGRIGSDLSLSMSDQNQILVLQSGPSSHNSQVLATAAASSGFAPQIRPSKNWLQKNGFHCLMRPS | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 31567071 | 31569628 | + | evm.model.ptg000014l.910 | HCH14g0298 | 558201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0298 | 538 | ProSiteProfiles | AP2/ERF domain profile. | 160 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | CDD | AP2 | 160 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | Pfam | AP2 domain | 160 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | Pfam | AP2 domain | 251 | 301 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | ProSiteProfiles | AP2/ERF domain profile. | 252 | 309 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 42 | 397 | - | - | |
HCH14g0298 | 538 | FunFam | AP2-like ethylene-responsive transcription factor | 159 | 218 | - | - | |
HCH14g0298 | 538 | SMART | rav1_2 | 160 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | SMART | rav1_2 | 252 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
HCH14g0298 | 538 | SUPERFAMILY | DNA-binding domain | 251 | 310 | IPR016177 | GO:0003677(InterPro) | |
HCH14g0298 | 538 | MobiDBLite | consensus disorder prediction | 133 | 161 | - | - | |
HCH14g0298 | 538 | FunFam | AP2-like ethylene-responsive transcription factor | 251 | 311 | - | - | |
HCH14g0298 | 538 | MobiDBLite | consensus disorder prediction | 367 | 403 | - | - | |
HCH14g0298 | 538 | MobiDBLite | consensus disorder prediction | 425 | 447 | - | - | |
HCH14g0298 | 538 | MobiDBLite | consensus disorder prediction | 355 | 403 | - | - | |
HCH14g0298 | 538 | Gene3D | AP2/ERF domain | 159 | 218 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | Gene3D | AP2/ERF domain | 251 | 310 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | CDD | AP2 | 251 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | PRINTS | Ethylene responsive element binding protein signature | 291 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | PRINTS | Ethylene responsive element binding protein signature | 253 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0298 | 538 | SUPERFAMILY | DNA-binding domain | 159 | 217 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0244 | HCH-Chr11:2206554 | HCH14g0298 | HCH-Chr14:31567071 | 2.10E-87 | dispersed | |
HCH14g0298 | HCH-Chr14:31567071 | HCH9g0608 | HCH-Chr9:4070787 | 4.90E-84 | dispersed | |
HCH14g0298 | HCH-Chr14:31567071 | HCH2g0046 | HCH-Chr2:3409429 | 7.70E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32916 | PF00847 | AP2 | 3.80E-10 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0298 | K09284 | - | csv:101214724 | 586.26 |