Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0298 ATGTGGGATCTTAATGATTCTCCTGATCAAAGAGGAGACAATGAATCGGAGGGCTGTTCTTCTCCAAAGACTTCTATTGATGGAGATGATGAAAAGGGTAAGAGGGTTGGATCCGTTTCTAATTCTAGTTCTTCGGCTGTTGTCGTGGAAGACGGATCCGATGATGATGGAGATGTCGGAAAAACATTTGGATTTTCTGCTGATGATTCTATGGAAATTGATACGCCTGTCACTCATCAGTTTTTTCCAGTCGAAGAGAGTGAAATGAGCGGTGGTGATGCGGTTGCGGTTGGTGGTGGTGACGGCGGCAGTGGCGGTGGCGGTGGCGGTGGAGGAACAGGTTCTTCTTTCCCTCGAGCTCACTGGGTTGGGGTTAAATTCTGTCATCCTGATCCTCTAGGCGGTGGTTCAACGAAACCGGTGGAGATTTCACAGCCGATGAAAAAGAGCCGCCGTGGTCCTAGGTCCCGGAGCTCTCAATATCGTGGCGTTACTTTCTACCGGAGAACCGGCCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTTTATCTTGGTGGATTCGATACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCCGCCATTAAATTCCGAGGAGTAGAAGCAGACATAAACTTCAGTATCGAAGATTACGAGGACGATTTAAAACAGATGGGGAATTTAACAAAGGAAGAATTCGTGCATGTACTTCGCCGACAAAGCACTGGTTTCCCAAGAGGAAGCTCCAAGTATAGAGGTGTAACGTTACATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTCTAGGCAAAAAATATGTGTATCTGGGTTTGTTTGATACAGAAATTGAAGCTGCAAGGGCTTATGATAAAGCTGCAATTAAATGTAATGGCAAAGACGCTGTCACTAATTTCGATCCCACCATCTATGAGAATGAGCTCAATCCGACAACTGATTCAATCAGCAATTTGACCGATCATAGTCTTGATTTGAGTTTGGGAAATAATTCGATCTCGAAGCAAAACGACAGCCCACGAGCTGCCGTCGCTATTGATCACCACCATCACCATCACCAACACCAACACCAACACTCTTCTGCATCTTCATCGTCATCTATGCTCAACTTGCTGCAAGATTCAAGCGGAGGAGCAAATAGTAACAATAACAATCATCATCAATATAGTAGTAACAATGCACAAAGAAGAAATCGGTACTTGGAGAGTGAAACCATGCAGCTTCTCAGCCAAACACACATTCAATCTCCGGTAGGAGGTTCGTTTGAAATGCGACACGGGCAACTCAGCCGATCGCAGGCCGCCACCGGAGATCAGTCTCAAATATTGCTTCAAAGTCACAGTCCAAGCCTCAATTCTTTGAATTATCAAAGTCAGTTTTCAGGCAGCAGTAATGGAGGGAGAATAGGAAGTGATCTATCACTATCTATGAGTGATCAAAATCAAATTCTTGTTCTCCAATCCGGGCCTTCTTCTCATAATTCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCGCAGATTAGACCTTCTAAAAATTGGCTGCAGAAGAACGGGTTTCACTGTCTCATGAGACCCTCCTGA 1617 45.27 MWDLNDSPDQRGDNESEGCSSPKTSIDGDDEKGKRVGSVSNSSSSAVVVEDGSDDDGDVGKTFGFSADDSMEIDTPVTHQFFPVEESEMSGGDAVAVGGGDGGSGGGGGGGGTGSSFPRAHWVGVKFCHPDPLGGGSTKPVEISQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPTIYENELNPTTDSISNLTDHSLDLSLGNNSISKQNDSPRAAVAIDHHHHHHQHQHQHSSASSSSSMLNLLQDSSGGANSNNNNHHQYSSNNAQRRNRYLESETMQLLSQTHIQSPVGGSFEMRHGQLSRSQAATGDQSQILLQSHSPSLNSLNYQSQFSGSSNGGRIGSDLSLSMSDQNQILVLQSGPSSHNSQVLATAAASSGFAPQIRPSKNWLQKNGFHCLMRPS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 31567071 31569628 + evm.model.ptg000014l.910 HCH14g0298 558201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0298 538 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 CDD AP2 160 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 Pfam AP2 domain 160 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 Pfam AP2 domain 251 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 42 397 - -
HCH14g0298 538 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
HCH14g0298 538 SMART rav1_2 160 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 SMART rav1_2 252 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 MobiDBLite consensus disorder prediction 1 67 - -
HCH14g0298 538 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677(InterPro)
HCH14g0298 538 MobiDBLite consensus disorder prediction 133 161 - -
HCH14g0298 538 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
HCH14g0298 538 MobiDBLite consensus disorder prediction 367 403 - -
HCH14g0298 538 MobiDBLite consensus disorder prediction 425 447 - -
HCH14g0298 538 MobiDBLite consensus disorder prediction 355 403 - -
HCH14g0298 538 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 CDD AP2 251 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0298 538 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0244 HCH-Chr11:2206554 HCH14g0298 HCH-Chr14:31567071 2.10E-87 dispersed
HCH14g0298 HCH-Chr14:31567071 HCH9g0608 HCH-Chr9:4070787 4.90E-84 dispersed
HCH14g0298 HCH-Chr14:31567071 HCH2g0046 HCH-Chr2:3409429 7.70E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32916 PF00847 AP2 3.80E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0298 K09284 - csv:101214724 586.26