Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0299 ATGGAAAGTGGAGGAGACGGCGTGAGAGACTCAGCAAGAAAAAGAGGAGTCGAGAATCAGAGACCATATAAAGGGATAAGGATGAGAAAGTGGGGTAAATGGGTGGCTGAGATTCGAGAACCCAATAAACGTTCCAGGATTTGGCTTGGTTCTTACTCCTCTCCCGTCGCCGCCGCTCGTGCTTACGATACCGCCGTCTTTTACCTCCGTGGCCCTTCTGCTAGACTCAATTTTCCCGAATTATTAGCTAGAGACGGCGGCGGTTGCCGCGGCGATATGTCGGCTGCTTCTATAAGGAAAAAAGCCACCGAGGTCGGAGCTAGAGTTGATGCCTTAGAGAGTTCTTTGGGTCATCGCCGGAATCATGATCGACATGATTCATCAACGGCGCCACTGCCGGAGCTTAAAGCCTGTGGCGCGTTCTTGGATCGGGTGGATTTGAATAAGTTACCCGACCCGGAAGAAGCAGATGGTGAGTTTGAGTGGGAGACAAATTGA 498 51.2 MESGGDGVRDSARKRGVENQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLARDGGGCRGDMSAASIRKKATEVGARVDALESSLGHRRNHDRHDSSTAPLPELKACGAFLDRVDLNKLPDPEEADGEFEWETN 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 31600343 31600840 - evm.model.ptg000014l.909 HCH14g0299 558202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0299 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 159 - -
HCH14g0299 165 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 CDD AP2 23 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 MobiDBLite consensus disorder prediction 113 132 - -
HCH14g0299 165 FunFam Ethylene-responsive transcription factor 2 21 80 - -
HCH14g0299 165 MobiDBLite consensus disorder prediction 113 130 - -
HCH14g0299 165 MobiDBLite consensus disorder prediction 1 22 - -
HCH14g0299 165 Pfam AP2 domain 23 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0299 165 MobiDBLite consensus disorder prediction 6 22 - -
HCH14g0299 165 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0299 HCH-Chr14:31600343 HCH14g1076 HCH-Chr14:37773807 1.70E-19 dispersed
HCH12g0609 HCH-Chr12:3583078 HCH14g0299 HCH-Chr14:31600343 4.70E-40 wgd
HCH14g0299 HCH-Chr14:31600343 HCH4g0625 HCH-Chr4:4087899 8.00E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32917 PF00847 AP2 2.10E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0299 K09286 - csv:101214481 239.58