Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0302 ATGAACCAGAATCCCACCACATTCCTCCTCCTCTTCGTCCTCTTACTCCGTCTCCCCACTTCCACCTCCCAAACCCCACCGCCGCCGCCATCCGACGCCGTTTCACTCCTCTCCTTCAAATCAAAATCCGACTTAAACAACAAACTCCTCTACACTCTGAACGAGCCTTTCGACTACTGTCAATGGCAAGGCGTCAAATGCCTCCAAGGCTACGTCATCCATCTCCTCCTTCCTTCCTTTAATCTCCGCGGCATTCTGGCTCCCGACACTCTCTCCCATTTATACCAACTCCGTGTTCTTAGCCTCCATAACAACTCCCTCTACGGCCCCATCCCTGATTTCTCCTCTCTCTCTAACCTCAAATCTCTCTCCCTCTCCCATAACTCTTTCTCTGGTTCTTTACCTCCTTCCCTTCTCTCTCTTCATCGCCTTCAAACTCTTGATTTCTCTTTCAACAACTTCTCCGGTCCTATCCCGGTTCGCATTTTATCACTGGACCGCCTTCTCATTCTCAAACTCGAATTCAACCGTTTTAACGGCACTGTCCCGCCGTTGAATCAGCCGTTTCTTTTCCTTTTGAATCTCACGGGGAATAATTTGACCGGGAAGATCCCCGTCACTCCCACGCTTTCCAGATTCAACTCCTCGTCGTTCTTCTCCAATTTCGATCTTTGCGGTGAGATTGTTAACAAGGAGTGTAAATCTCGTGATTCGTTTTTCGGTCGCGATTTCAATCAATCTGCACCGTCAGTTCAAAACACGGAATCAACGGATGTGATTCTCTCCCCCGTTACTCACAGCAAACGCGACGGAAATCGATTGGTTTTAGGGTTTTCGATCGCCGCGATGGTTTTAGTAGCTGGAATCGTGTGTTTCTACGCATCGACGAGGAAAGGAACGAGGAAATCAATGGCGAGGGATTCTGGGATTGAGGAGAAGATTGAATTTGAAACGAAAGTGAAGGGAATTGAAAAGAATCAGAAGAGCGATGATAATGTTGTGTTCAATGAAGAAGGAGAAGGATTGTTTAGTATAGAGGAGTTGATGAGGGCTTCGGCGGAGTTGCTTGGGAGAGGAACGATTGGGATTACGTATAAAGCAGTGTTGTGTAATCGATTAATGGTGACGGTGAAGAGAATGGATGGTTGTAAGAGCGCTGCAACGAGCGATCAAGAGTTCGAGAGGCATATGGAAGTGGTGTGTGGATTACGGCATCCGAATTTGGTTCCGATCAGGGCTTATTTTCAGGCGAGGGGAGAGAGATTAGTGGTTTATGATTATCAACCTAATGGTAGTCTCTTCAATCTCATTCATGGTTCGAGATCGGCAAGGGCTAAGCCTCTGCACTGGACATCATGCCTGAAGATTGCAGAAGATTTGGCTCAGGGCATTGCTTATATACATCAAGCTTCAAAGTTAATTCATGGCAACTTGAAGTCTACTAATGTTCTCCTTGGAGCAGACTTTGAGGCCTGTCTTACAGATTATTGCCTTTCTGTCCTGGTAGATTGTTCTGAAGATGCAGATTCTTCCCACTACCGAGCCCCCGAAACTCGCAAGTCCGGTCACAGAGCCACCCACAAGAGTGACGTCTATGCCTTTGGCGTCCTCTTACTAGAGCTTTTGACAGGCAGACATCCTTCACAGCATCCATTCCTTGAGCCAACTGATGTGGCAGACTGGGTTAGAGCAGTCAGGGAAGATGATGGTGGGGAAAGCCACCAACTTGGAATGCTTACTGAGGTAGCTAGCATCTGCAGTACGACATCCCCTGAACAGAGACCGACAATGTGGCAGGTTTTGAAAATGATACATGAGATTAAGGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTCTAA 1866 47.37 MNQNPTTFLLLFVLLLRLPTSTSQTPPPPPSDAVSLLSFKSKSDLNNKLLYTLNEPFDYCQWQGVKCLQGYVIHLLLPSFNLRGILAPDTLSHLYQLRVLSLHNNSLYGPIPDFSSLSNLKSLSLSHNSFSGSLPPSLLSLHRLQTLDFSFNNFSGPIPVRILSLDRLLILKLEFNRFNGTVPPLNQPFLFLLNLTGNNLTGKIPVTPTLSRFNSSSFFSNFDLCGEIVNKECKSRDSFFGRDFNQSAPSVQNTESTDVILSPVTHSKRDGNRLVLGFSIAAMVLVAGIVCFYASTRKGTRKSMARDSGIEEKIEFETKVKGIEKNQKSDDNVVFNEEGEGLFSIEELMRASAELLGRGTIGITYKAVLCNRLMVTVKRMDGCKSAATSDQEFERHMEVVCGLRHPNLVPIRAYFQARGERLVVYDYQPNGSLFNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASKLIHGNLKSTNVLLGADFEACLTDYCLSVLVDCSEDADSSHYRAPETRKSGHRATHKSDVYAFGVLLLELLTGRHPSQHPFLEPTDVADWVRAVREDDGGESHQLGMLTEVASICSTTSPEQRPTMWQVLKMIHEIKESVMTEDSESSGF 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 31658011 31661071 - evm.model.ptg000014l.906 HCH14g0302 558205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0302 621 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 31 613 IPR046959 -
HCH14g0302 621 Gene3D Transferase(Phosphotransferase) domain 1 429 619 - -
HCH14g0302 621 SUPERFAMILY L domain-like 30 215 - -
HCH14g0302 621 SUPERFAMILY Protein kinase-like (PK-like) 354 609 IPR011009 -
HCH14g0302 621 ProSiteProfiles Protein kinase domain profile. 350 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0302 621 Gene3D Ribonuclease Inhibitor 188 235 IPR032675 -
HCH14g0302 621 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
HCH14g0302 621 FunFam Nuclear pore complex protein NUP107 30 184 - -
HCH14g0302 621 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
HCH14g0302 621 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
HCH14g0302 621 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515(InterPro)
HCH14g0302 621 Pfam Leucine Rich Repeat 96 114 IPR001611 GO:0005515(InterPro)
HCH14g0302 621 Pfam Protein tyrosine and serine/threonine kinase 354 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0302 HCH-Chr14:31658011 HCH1g0105 HCH-Chr1:8230422 4.90E-104 dispersed
HCH14g0302 HCH-Chr14:31658011 HCH4g0623 HCH-Chr4:4077127 1.50E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81226 PF07714 PK_Tyr_Ser-Thr 1.20E-29 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0302 - - - 0.0