Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0304 ATGGCCTTAGAAATCATGACGCAACAACGATTCACAAATAATAATAATTATTATAACACCTTCTCCTCCAAAATGGATTCCCACGCCGTTCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCGAGAAACTCATCCTCTTACTATCCAACTCTCCACAAATCCCATCTCCCGATTCCCTCGACATCGATCGTGACTGCAAAGCCGTCGCCGACGCCGCCGTTTCCAAATTCAGAAAAGTCATCTCCCTCCTCAATCGTACCACACTCGGTCACGCTAGGTTTAGAAAAGCTCCCCTCCCTCTTCCTCTCTCCTCCGACACTTCTCACTCCTCTCAGGTTCTTTACGCCACGCCGATCCAGCAGATTCCGCCGCATCGGAATTACCACGGCGGAGGAGGTGAGGTTGAGAAGAAGGAATTGTTAAGCAGCAGTGTGAATTTCTCTTACTCTTCGGCTCGTAATTCGTTTGTGTCGTCGGTGACGGGTGACGGTGACGGTGACAGTAAGCAGATCACGTCGTCGTCGGCGGGTTTTCAGATTAGTAACATATCGCAGGTTTCGTCGGGTGGAAAACCTCCATTGAAGAGGAAGTGTAGCTCTGATAACGTGGGATCTGGGAAGTGTGGTTCAGCCGGGCGATGCCATTGTTCTAAGAAGAGAAAAACGAGGGTGAAGAGAGTGGTTAGGGTTCCGGCGATAAGTTTGAAAATGTCGGATATACCGCCGGACGATTATTCGTGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCAAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCTCGGAAACACGTAGAGAGGGCCGTAGACGATCCAGCAATGCTAGTCGTCACATACGAAGGAGAACACAATCACAGTCTCCTTGTCGCAGAAACCAGCAATCTCATCTTAGAGTCCTCATAA 942 49.79 MALEIMTQQRFTNNNNYYNTFSSKMDSHAVQEAASGLESVEKLILLLSNSPQIPSPDSLDIDRDCKAVADAAVSKFRKVISLLNRTTLGHARFRKAPLPLPLSSDTSHSSQVLYATPIQQIPPHRNYHGGGGEVEKKELLSSSVNFSYSSARNSFVSSVTGDGDGDSKQITSSSAGFQISNISQVSSGGKPPLKRKCSSDNVGSGKCGSAGRCHCSKKRKTRVKRVVRVPAISLKMSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHSLLVAETSNLILESS 313
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 31675357 31676939 - evm.model.ptg000014l.904 HCH14g0304 558207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0304 313 FunFam WRKY transcription factor 65 224 301 - -
HCH14g0304 313 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0304 313 MobiDBLite consensus disorder prediction 181 210 - -
HCH14g0304 313 SUPERFAMILY WRKY DNA-binding domain 238 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0304 313 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0304 313 SMART WRKY_cls 240 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0304 313 Gene3D WRKY domain 226 300 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0304 313 Pfam Plant zinc cluster domain 194 238 IPR018872 -
HCH14g0304 313 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 306 IPR044810 GO:0003700(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0304 HCH-Chr14:31675357 HCH8g1073 HCH-Chr8:46622608 1.10E-51 dispersed
HCH12g0297 HCH-Chr12:1703611 HCH14g0304 HCH-Chr14:31675357 3.30E-59 transposed
HCH5g1320 HCH-Chr5:50115127 HCH14g0304 HCH-Chr14:31675357 3.80E-52 transposed
HCH12g0602 HCH-Chr12:3532882 HCH14g0304 HCH-Chr14:31675357 4.80E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32918 PF03106 WRKY 3.70E-26 CL0274 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0304 - - - 0.0