Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0311 ATGGCTCTCCCTCAAGTAGAAGAATCCCAAACTCAAGAGCTTGAAACTCACTCATTACTTCTTGATGCTCTTTTCTGTGAAGAGCTTGATTGTGATGAAGATTCCTATGAAGATAATAATGATTACTATGAAACTTTGAGAAAAAACCAACCTTTTGATTCTTTTGAAAATGACTTATTTTGTGAAGATAACAATGAGCTTCAATCTCTTGTTTCTAAACAAGAACAAACCCATGTTTCCTTTTGTTTTGTTTTCTCTGATAGGTGTCTAATTGAGGCAAGAAAAGAGGCATTGGCTTGGATTTTTAGAGTCAGAGATCATTACAGTTTCTCTGCTTTGACATCTCTTCTAGCTGTTAATTACTTTGATAGATTTATTTCCAATGTAAGATTTCAAAGGGATAAACCATGGATGAGCCAGCTTGCTGCTGTTGCTTGTCTTTCTCTTGCTGCTAAAGTGGAGGAGACCCGTGTGCCGCTTCTCCTTGACCTTCAAGTGGTAGAGGCAAAGTTTGTATTTGAAGCTAAAACCATTCAAAGAATGGAGCTTTTGGTCTTATCTGCCCTTCAGTGGAAGATGCATCCAGTGACCCCTTTTTCCTTCTTCCATCACATAATCAAGAGACTGCCTTTGAAAAACAATATGCTTTGGGAGTTTTTTGGAAGGTTTCAAAGCCTTCTTCTCTCTATCTTAGCTGATCATAGATTCTTGTGCTACCTGCCTTCTGTCTTAGCCACTGCTACAGTACTGCATGTCATTAGTGAGATTGAGCCTTATAATTTACTGGAATATCAGAATCAGCTATTGAGTGTTCTTAAAATCAATAAGAATCAACTGGATGAATGTCACAAGTTCATCCTTGGTTCACTGGGCAGTCATGGCTATTTGCACAATCATCCAAGTAACAAATGCAAGCCAAAATCCGAACCCGGCAGCCCGTATGATGTTATCGACGGATTCTTCATATCGGAATCGTCTAACGATTCATGGCCAGAGGTATCATCTGTCTCACCCTAG 1017 39.13 MALPQVEESQTQELETHSLLLDALFCEELDCDEDSYEDNNDYYETLRKNQPFDSFENDLFCEDNNELQSLVSKQEQTHVSFCFVFSDRCLIEARKEALAWIFRVRDHYSFSALTSLLAVNYFDRFISNVRFQRDKPWMSQLAAVACLSLAAKVEETRVPLLLDLQVVEAKFVFEAKTIQRMELLVLSALQWKMHPVTPFSFFHHIIKRLPLKNNMLWEFFGRFQSLLLSILADHRFLCYLPSVLATATVLHVISEIEPYNLLEYQNQLLSVLKINKNQLDECHKFILGSLGSHGYLHNHPSNKCKPKSEPGSPYDVIDGFFISESSNDSWPEVSSVSP 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 31788478 31789826 + evm.model.ptg000014l.897 HCH14g0311 558214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0311 338 SMART cyclin_7 99 187 IPR013763 -
HCH14g0311 338 FunFam D6-type cyclin 71 194 - -
HCH14g0311 338 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
HCH14g0311 338 SUPERFAMILY Cyclin-like 178 288 IPR036915 -
HCH14g0311 338 Gene3D - 80 194 - -
HCH14g0311 338 SUPERFAMILY Cyclin-like 64 194 IPR036915 -
HCH14g0311 338 PANTHER CYCLINS 27 284 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH14g0311 338 SMART Cyclin_C_2 196 328 IPR004367 -
HCH14g0311 338 Pfam Cyclin, N-terminal domain 89 193 IPR006671 -
HCH14g0311 338 CDD CYCLIN_AtCycD-like_rpt2 196 284 - -
HCH14g0311 338 Gene3D - 67 284 - -
HCH14g0311 338 Pfam Cyclin, C-terminal domain 196 290 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0311 HCH-Chr14:31788478 HCH4g1861 HCH-Chr4:48653593 1.00E-71 dispersed
HCH12g0596 HCH-Chr12:3496908 HCH14g0311 HCH-Chr14:31788478 3.80E-61 wgd
HCH14g0311 HCH-Chr14:31788478 HCH4g0620 HCH-Chr4:4058121 4.00E-68 wgd
HCH14g0311 HCH-Chr14:31788478 HCH7g0676 HCH-Chr7:7566241 2.20E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0311 K14505 - csv:101216655 471.855