Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0372 ATGGGTGCACCTAAGCAGAAATGGACAGCAGAAGAAGAAGCCGCCCTTAAAGCAGGAGTGATTAAGCATGGGGCGGGAAAATGGCGCACGATACTCACAGATCCAGAGTTCAGCCCAATTTTGCATCAGCGCTCAAATGTAGATCTCAAGGATAAATGGAGAAACATAAATGTTACTGCAATTTGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCCTTGGCCTTGAAACATCAGGATAATTCTATGGCTTTAAGTACTGTGATTCACAATGAAGAGATTGTTGATGCTAAGCCACTTGCAGTTTCTAGTGGAACAATTCGCAGTATTGGTCCAAAAGAACCACTTGCAAGATTGGATAAACTTATATCAGAGGCAATTAATAACTTGAAGGAGTCAAGGGGTTCTGACAGGGCTGCAATTGCTATGTACATACAGGAGCATTACTGGGCCCCTCCAAACCTTAAAAAACTCCTGTCAACGAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTTCGAATTCGGGCTTTTCTGGAAAAAGAAATGTTCCACTACTGGAGGGAAAGCAGCTGGATTCTTCAAAAGCTGAGAAGAGTGAGGTCAAAATCATTACTAAATCCCAGGTTGAGTCAGAACTTTCAAACATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCTCGAGCAGTTGCTGAGGCGGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAGGAAGCAGAGGCGGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTAGAGTCCAGAACATTCTTTACTAAAATTCCCATTCAGAAAATTCTCCTCCAAGATAAAGGAATGTTGCAGTGA 921 43.11 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSPILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHQDNSMALSTVIHNEEIVDAKPLAVSSGTIRSIGPKEPLARLDKLISEAINNLKESRGSDRAAIAMYIQEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIASNSGFSGKRNVPLLEGKQLDSSKAEKSEVKIITKSQVESELSNMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALESRTFFTKIPIQKILLQDKGMLQ 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32674738 32678311 - evm.model.ptg000014l.836 HCH14g0372 558275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0372 306 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
HCH14g0372 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
HCH14g0372 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
HCH14g0372 306 CDD SANT_TRF 6 57 - -
HCH14g0372 306 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691(InterPro)
HCH14g0372 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 Gene3D - 118 213 IPR036388 -
HCH14g0372 306 Coils Coil 238 275 - -
HCH14g0372 306 Pfam linker histone H1 and H5 family 123 192 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 FunFam Telomere repeat-binding factor 1 2 58 - -
HCH14g0372 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
HCH14g0372 306 SMART sant 4 59 IPR001005 -
HCH14g0372 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
HCH14g0372 306 Gene3D - 2 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0372 K09422 - - csv:101202913 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0919 HCH-Chr11:40415998 HCH14g0372 HCH-Chr14:32674738 5.10E-67 dispersed
HCH14g0372 HCH-Chr14:32674738 HCH6g0093 HCH-Chr6:1173756 6.50E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0919 . 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 66.0 1.1e-82 303.5
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 2.5e-61 232.6
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT5G67580 52.0 2.0e-63 239.6
HCH14g0372 . 1 245 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 1.1e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32927 PF00538 Linker_histone 9.10E-12 CL0123 HCH TF