Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0372 ATGGGTGCACCTAAGCAGAAATGGACAGCAGAAGAAGAAGCCGCCCTTAAAGCAGGAGTGATTAAGCATGGGGCGGGAAAATGGCGCACGATACTCACAGATCCAGAGTTCAGCCCAATTTTGCATCAGCGCTCAAATGTAGATCTCAAGGATAAATGGAGAAACATAAATGTTACTGCAATTTGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCCTTGGCCTTGAAACATCAGGATAATTCTATGGCTTTAAGTACTGTGATTCACAATGAAGAGATTGTTGATGCTAAGCCACTTGCAGTTTCTAGTGGAACAATTCGCAGTATTGGTCCAAAAGAACCACTTGCAAGATTGGATAAACTTATATCAGAGGCAATTAATAACTTGAAGGAGTCAAGGGGTTCTGACAGGGCTGCAATTGCTATGTACATACAGGAGCATTACTGGGCCCCTCCAAACCTTAAAAAACTCCTGTCAACGAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTTCGAATTCGGGCTTTTCTGGAAAAAGAAATGTTCCACTACTGGAGGGAAAGCAGCTGGATTCTTCAAAAGCTGAGAAGAGTGAGGTCAAAATCATTACTAAATCCCAGGTTGAGTCAGAACTTTCAAACATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCTCGAGCAGTTGCTGAGGCGGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAGGAAGCAGAGGCGGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTAGAGTCCAGAACATTCTTTACTAAAATTCCCATTCAGAAAATTCTCCTCCAAGATAAAGGAATGTTGCAGTGA 921 43.11 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSPILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHQDNSMALSTVIHNEEIVDAKPLAVSSGTIRSIGPKEPLARLDKLISEAINNLKESRGSDRAAIAMYIQEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIASNSGFSGKRNVPLLEGKQLDSSKAEKSEVKIITKSQVESELSNMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALESRTFFTKIPIQKILLQDKGMLQ 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32674738 32678311 - evm.model.ptg000014l.836 HCH14g0372 558275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0372 306 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
HCH14g0372 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
HCH14g0372 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
HCH14g0372 306 CDD SANT_TRF 6 57 - -
HCH14g0372 306 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691(InterPro)
HCH14g0372 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 Gene3D - 118 213 IPR036388 -
HCH14g0372 306 Coils Coil 238 275 - -
HCH14g0372 306 Pfam linker histone H1 and H5 family 123 192 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 FunFam Telomere repeat-binding factor 1 2 58 - -
HCH14g0372 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH14g0372 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
HCH14g0372 306 SMART sant 4 59 IPR001005 -
HCH14g0372 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
HCH14g0372 306 Gene3D - 2 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0919 HCH-Chr11:40415998 HCH14g0372 HCH-Chr14:32674738 5.10E-67 dispersed
HCH14g0372 HCH-Chr14:32674738 HCH6g0093 HCH-Chr6:1173756 6.50E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32927 PF00538 Linker_histone 9.10E-12 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0372 K09422 - csv:101202913 435.261