Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0388 ATGAATAATGTCAATGGTAGCAGCAGCAGTTGTAACTGGCTAGGTTTCTCTGTCTCTCCCAGCATTAACATGGAGCTTTCTTCTTCCTCTTCTGCTACTGCTGTTTCCCATTCCATTCCTTCAAGTTTTTTCCACTCCCCATCACAGTTTAACTATGGCATTTGCTATGGTGTTGTTGATGGAGAAAATGGTGGTTTTTATTCTCCTTCTCCAGTGATGCCTCTCAAGTCTGATGGCTCCATTTGTTCAATGGAAGCTCTCACTAGGCATCATCCTGCACAAGTGGTGAATAGCTCTACTCCAAAACTAGAAGATTTCTTTGGTGGTGCAACCATGGCCATGGGGTCCCATCACTATGAAAGCAATGACAGAGAAGCTATGGCTCTCAGCTTAGACAGCATATTTTGCCACCAAAATCCAACTCATCATGAGCCCAACAACCAACCCTTCTCCCATTTCTCACATTTAAGAAGAAATGAAGTCATGCTTCAAGAGGGATATAATCTGCAGCACCCACCAACAGTAGCAGGAAATGAGATTTCTGATATGAAGAATTGGGTCATTCCAAGAAACTATACAGCACCTAATGGTTCATTTGAGCAGAAAATGGAAACTTGCATGAGTGAAAATGGATCAGTTAATGCCATGGCTTATGGAGATTTACAATCATTGAGCTTGTCTATGAATATGAGCCCAAGTTCTCAGTCAAGTTGTGTTACAGGCACAGTCTCAGCTGCTGTCAATGATTCTTCTATTATGGATACAAAGAAGAGAGGGCATGAGAAGTTGGATCAAAAGCAAATTGTACATAGGAAGTCTCTTGATACTTTTGGACAAAGAACCTCACAGTATAGAGGGGTTACAAGACACAGATGGACTGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAAGGAAGACAAGTATACCTTGGAGGCTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATCAACTCTCCTTTGGAGAACTATCAGAAGGAATTAGAGGAAATGAAAAACATGAGCAGACAGGAATATGTTGCTCACCTGAGAAGGAGAAGCAGTGGATTCTCGAGGGGCGCCTCGATTTACAGAGGTGTTACAAGACATCATCAACATGGAAGATGGCAAGCGCGGATTGGCCGAGTTGCTGGTAACAAGGATCTGTATCTTGGGACATTCAGCACTCAAGAGGAAGCAGCCGAGGCCTATGATATAGCGGCTATAAAATTCCGAGGGATGAATGCTGTTACTAACTTCGACATTACAAGGTATGACGTTGAACGGATCATTGCAAGCAATACCCTCCTTAGCGGCGATCTCGCCAGGAGAAAGCAACAGCAGCAGCAGCAACATCAGCCAGAGTTTGATAATGGGACTATCAGACAAAGCCCTCCTACTCACAACAGCAATGGGGAGGCTATACCTTTACCTTTACCTTCACAGAGTAATCAGAGTGAATCAGAATGGAAGATGGCACTATATCAGTCCTCTCAACAACTTGTCCCGAAACCCCGGTTGATGTCTGTGACAACCGATGAAGGTTCACTAATGGGAGTCGAAGACTCTGCCAAAATGGGGGCTCACTTCTCCAATGCCTCTTCAATGGTGACAAGCTGCAGCTTGAGCAGCTCAAGGGAAGACAGTCCAGACAAGACCAGCCTATCTATGGTGTTCGGAATGCCACAGTCTACACCCAAGATGTTCGTCGCCCCACCTACTGCTAGTAATATGAATTCCTCCTGGATTGCATCTGCCCAGCAGCTGAGAGCTGCAAATTGTATGACCCAGATGCCAGTTTTTGCTGCTTGGACTGACACTTAA 1890 44.71 MNNVNGSSSSCNWLGFSVSPSINMELSSSSSATAVSHSIPSSFFHSPSQFNYGICYGVVDGENGGFYSPSPVMPLKSDGSICSMEALTRHHPAQVVNSSTPKLEDFFGGATMAMGSHHYESNDREAMALSLDSIFCHQNPTHHEPNNQPFSHFSHLRRNEVMLQEGYNLQHPPTVAGNEISDMKNWVIPRNYTAPNGSFEQKMETCMSENGSVNAMAYGDLQSLSLSMNMSPSSQSSCVTGTVSAAVNDSSIMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINSPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLARRKQQQQQQHQPEFDNGTIRQSPPTHNSNGEAIPLPLPSQSNQSESEWKMALYQSSQQLVPKPRLMSVTTDEGSLMGVEDSAKMGAHFSNASSMVTSCSLSSSREDSPDKTSLSMVFGMPQSTPKMFVAPPTASNMNSSWIASAQQLRAANCMTQMPVFAAWTDT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 32888056 32891196 + evm.model.ptg000014l.820 HCH14g0388 558291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0388 629 FunFam AP2-like ethylene-responsive transcription factor ANT 282 351 - -
HCH14g0388 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 504 - -
HCH14g0388 629 MobiDBLite consensus disorder prediction 463 510 - -
HCH14g0388 629 SUPERFAMILY DNA-binding domain 282 349 IPR016177 GO:0003677(InterPro)
HCH14g0388 629 ProSiteProfiles AP2/ERF domain profile. 283 349 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 Pfam AP2 domain 386 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 Pfam AP2 domain 283 341 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 Gene3D AP2/ERF domain 282 350 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 Gene3D AP2/ERF domain 385 445 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 SUPERFAMILY DNA-binding domain 384 444 IPR016177 GO:0003677(InterPro)
HCH14g0388 629 CDD AP2 282 349 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 ProSiteProfiles AP2/ERF domain profile. 385 443 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 Coils Coil 350 370 - -
HCH14g0388 629 PRINTS Ethylene responsive element binding protein signature 425 445 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 PRINTS Ethylene responsive element binding protein signature 284 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 FunFam AP2-like ethylene-responsive transcription factor 384 445 - -
HCH14g0388 629 SMART rav1_2 385 449 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 SMART rav1_2 283 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0388 629 CDD AP2 384 445 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0388 HCH-Chr14:32888056 HCH6g0075 HCH-Chr6:918144 2.80E-107 dispersed
HCH12g0534 HCH-Chr12:3144113 HCH14g0388 HCH-Chr14:32888056 2.10E-136 wgd
HCH14g0388 HCH-Chr14:32888056 HCH4g0569 HCH-Chr4:3729795 4.90E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32931 PF00847 AP2 1.20E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0388 K09285 - csv:101203323 985.326