Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0398 ATGGGGTTTGATGATCTTTCTAATACAAACCTTCTTTTAGGTTTGGGATTAACAACCCTCTCTCCTTCTAAAACTGAACCCAAGAAGCCATTACCATCCAATAATTTCAAAGATTATGAAGATCCCTGTTTGGCCTTGGGGCTTTCCACCGAGACTTATAATCAGGCTGCCACGAAACTGGGTTTCTCAGATCAGGAAATAACAGTTGATAATTTGTATCGTCAAGCTTCACCACACAGCACGGTTTCTTCTTTCTCTGGTGGTAGGGTTAAGCGTGAGAGAGAAGTTTTTGGTGATGAAATCGAACAAGACAAACCTTCCTCTCGTCTTGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGGAAGAAACTTAGGTTAACTAAAGAACAGTCTGCTCTTTTGGAAGAAAGCTTCAAACTTCATAGCACTCTCAATCCTAAGCAAAAACAAGCTTTAGCAAGGGAATTAAATCTGCGGCCTCGACAAGTTGAAGTTTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAACAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGTGAAACTCTAACAGATGAAAACAGGAGGCTCCAAAAAGAGCTACAAGAACTCAAAGCACTGAAACTTGCGGTTGCGCAGCCTCTCTTCATGCAAATGCCGGCGGCGACGCTCACCATGTGCCCTTCTTGTGAACGGATCGGCGGTGGGGTTAACGGCGGTGGAGGCGGCGACGGTGCTTCCAAGAGCCCATTTTCCATGGCTCCGAAGCCTCACTTTTACAACCCTTTTACAAATCCCTCTGCTGCATGCTAG 825 44.61 MGFDDLSNTNLLLGLGLTTLSPSKTEPKKPLPSNNFKDYEDPCLALGLSTETYNQAATKLGFSDQEITVDNLYRQASPHSTVSSFSGGRVKREREVFGDEIEQDKPSSRLVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAVAQPLFMQMPAATLTMCPSCERIGGGVNGGGGGDGASKSPFSMAPKPHFYNPFTNPSAAC 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33013592 33014850 + evm.model.ptg000014l.810 HCH14g0398 558301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0398 274 Coils Coil 184 214 - -
HCH14g0398 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 270 IPR050762 -
HCH14g0398 274 Pfam Homeodomain 122 176 IPR001356 GO:0003677(InterPro)
HCH14g0398 274 SMART halz 178 223 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0398 274 MobiDBLite consensus disorder prediction 95 121 - -
HCH14g0398 274 SMART HOX_1 120 182 IPR001356 GO:0003677(InterPro)
HCH14g0398 274 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH14g0398 274 FunFam Homeobox-leucine zipper protein 18 107 183 - -
HCH14g0398 274 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
HCH14g0398 274 CDD homeodomain 122 179 IPR001356 GO:0003677(InterPro)
HCH14g0398 274 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677(InterPro)
HCH14g0398 274 Gene3D - 115 183 - -
HCH14g0398 274 Pfam Homeobox associated leucine zipper 178 212 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0398 HCH-Chr14:33013592 HCH6g1036 HCH-Chr6:45096222 1.60E-51 dispersed
HCH10g1305 HCH-Chr10:45549895 HCH14g0398 HCH-Chr14:33013592 4.30E-34 transposed
HCH6g0499 HCH-Chr6:18226695 HCH14g0398 HCH-Chr14:33013592 6.00E-85 transposed
HCH8g1078 HCH-Chr8:46647974 HCH14g0398 HCH-Chr14:33013592 2.70E-42 transposed
HCH12g0526 HCH-Chr12:3074291 HCH14g0398 HCH-Chr14:33013592 5.10E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32933 PF00046 Homeodomain 5.10E-16 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0398 K09338 - csv:101218782 329.331