Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0398 | ATGGGGTTTGATGATCTTTCTAATACAAACCTTCTTTTAGGTTTGGGATTAACAACCCTCTCTCCTTCTAAAACTGAACCCAAGAAGCCATTACCATCCAATAATTTCAAAGATTATGAAGATCCCTGTTTGGCCTTGGGGCTTTCCACCGAGACTTATAATCAGGCTGCCACGAAACTGGGTTTCTCAGATCAGGAAATAACAGTTGATAATTTGTATCGTCAAGCTTCACCACACAGCACGGTTTCTTCTTTCTCTGGTGGTAGGGTTAAGCGTGAGAGAGAAGTTTTTGGTGATGAAATCGAACAAGACAAACCTTCCTCTCGTCTTGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGGAAGAAACTTAGGTTAACTAAAGAACAGTCTGCTCTTTTGGAAGAAAGCTTCAAACTTCATAGCACTCTCAATCCTAAGCAAAAACAAGCTTTAGCAAGGGAATTAAATCTGCGGCCTCGACAAGTTGAAGTTTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAACAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGTGAAACTCTAACAGATGAAAACAGGAGGCTCCAAAAAGAGCTACAAGAACTCAAAGCACTGAAACTTGCGGTTGCGCAGCCTCTCTTCATGCAAATGCCGGCGGCGACGCTCACCATGTGCCCTTCTTGTGAACGGATCGGCGGTGGGGTTAACGGCGGTGGAGGCGGCGACGGTGCTTCCAAGAGCCCATTTTCCATGGCTCCGAAGCCTCACTTTTACAACCCTTTTACAAATCCCTCTGCTGCATGCTAG | 825 | 44.61 | MGFDDLSNTNLLLGLGLTTLSPSKTEPKKPLPSNNFKDYEDPCLALGLSTETYNQAATKLGFSDQEITVDNLYRQASPHSTVSSFSGGRVKREREVFGDEIEQDKPSSRLVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAVAQPLFMQMPAATLTMCPSCERIGGGVNGGGGGDGASKSPFSMAPKPHFYNPFTNPSAAC | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 33013592 | 33014850 | + | evm.model.ptg000014l.810 | HCH14g0398 | 558301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0398 | 274 | Coils | Coil | 184 | 214 | - | - | |
HCH14g0398 | 274 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 30 | 270 | IPR050762 | - | |
HCH14g0398 | 274 | Pfam | Homeodomain | 122 | 176 | IPR001356 | GO:0003677(InterPro) | |
HCH14g0398 | 274 | SMART | halz | 178 | 223 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0398 | 274 | MobiDBLite | consensus disorder prediction | 95 | 121 | - | - | |
HCH14g0398 | 274 | SMART | HOX_1 | 120 | 182 | IPR001356 | GO:0003677(InterPro) | |
HCH14g0398 | 274 | ProSitePatterns | 'Homeobox' domain signature. | 153 | 176 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH14g0398 | 274 | FunFam | Homeobox-leucine zipper protein 18 | 107 | 183 | - | - | |
HCH14g0398 | 274 | SUPERFAMILY | Homeodomain-like | 111 | 179 | IPR009057 | - | |
HCH14g0398 | 274 | CDD | homeodomain | 122 | 179 | IPR001356 | GO:0003677(InterPro) | |
HCH14g0398 | 274 | ProSiteProfiles | 'Homeobox' domain profile. | 118 | 178 | IPR001356 | GO:0003677(InterPro) | |
HCH14g0398 | 274 | Gene3D | - | 115 | 183 | - | - | |
HCH14g0398 | 274 | Pfam | Homeobox associated leucine zipper | 178 | 212 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0398 | HCH-Chr14:33013592 | HCH6g1036 | HCH-Chr6:45096222 | 1.60E-51 | dispersed | |
HCH10g1305 | HCH-Chr10:45549895 | HCH14g0398 | HCH-Chr14:33013592 | 4.30E-34 | transposed | |
HCH6g0499 | HCH-Chr6:18226695 | HCH14g0398 | HCH-Chr14:33013592 | 6.00E-85 | transposed | |
HCH8g1078 | HCH-Chr8:46647974 | HCH14g0398 | HCH-Chr14:33013592 | 2.70E-42 | transposed | |
HCH12g0526 | HCH-Chr12:3074291 | HCH14g0398 | HCH-Chr14:33013592 | 5.10E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32933 | PF00046 | Homeodomain | 5.10E-16 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0398 | K09338 | - | csv:101218782 | 329.331 |