Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0408 ATGAGACTTCTCCTCCTTCTCCTTCATCTCTTCCTGCAACTCCACTTTTTCACTTCCTCTGCACTCATTTCCGAATCCGAAGCTCTTCTCTCTTTCAAAAACTCCATTTCCGACGACCCTTTTTCCTCTCTCTCATCATGGAACTCCCTCACCAATCACTGCACATGGGCCAAAGTCACGTGCAACAACAACAACCATCACGTGACCATCCTCAACCTCTCCAATCTCAATCTTTCCGGCACTCTTTCCCCTGACCTTTCCTCCCTTCATTTCCTCACTAATCTCTCTTTCTCTTTCAACAGATTTTCTGGCAAAATCCCACCGGAAATCTCATCACTTTCCTCACTCCTTCATCTTGATCTCTCTAACAATATCTTTAATGGAACAATCCCTCATGAGTTTTCAAAGCTCGAGAATTTACTGGTTTTTGATGTTTATAATAATAACATGACTGGTGAATTTCCGATGGTTGTTACTGAAATGGGTAATTTAAAGTACTTGCATTTAGGTGGGAATTTTTTCACCGGGAGGATTCCTTCAGAGGTTGGACGTTTGGAGTTTTTGGAGTTTTTGGCAGTTCATGGTAATGAACTTGAAGGTTCAATTCCGCCGGAAATTGGAAACTTGACTAAGCTTCGTGAACTTTATATTGGTTACTATAATAGCTTTCATGGTGGAATTCCGGCGGAGATTGGAAACTTATCGGAGTTGGTTCGGTTCGATGCCGCTAGCTGTGGATTATCCGGACAGATACCGCCGGAGATCGGAAAGTTGAAGAAACTTAATATTTTGTATCTTCAACTGAATTCATTATCTGGGTCATTGCCTGATTTTGGAAATTTGAAGAATATGGAAGAGTTGGATTTATCATGCAATGTGTTTGATGGGGAGATCCCGTTTTCCTTTTCAGAGATGAAGAGTTTGAAGCTTTTGAATCTTTTTGAAAACAAATTTTATGGAAGGATTCCAGGGTTTATTGGAGATTTGCCAAAGTTGGAGACTTTGCAGTTGTGGAATAATAAGTTTAGTGAGTCTATTCCTCAAAATTTGGGGAAGAATGGTATGCTTAGGACTATTGATCTCGCTTTTAACAATTTGACTGGTAATGTTCCTCCTGATATTTGCTATGGAAATAAGCTTGAAACCTTGATTGTTATGAGTAATTTCTTATCGGGACCGATACCGAAATCGTTAGGTGATTGTGTTTCACTTAGGCGTGTACTAATGTGGGGCAATGCTATCAATGGATCAATTCCAAAGGGGCTTTTAAGTTTGCCAAATCTCACTGAGGTCGCATTGCATGATAATTTTCTCTCTGGAGAAGTTCCCATTACTGATTCTGTCTCAAAGAATCTTCTTCAGATTAGTTTATCTAATAACCAGCTCTCTGGATTGTTGCCATCTGCTATCGGTGGCCTTTCGGGCGTGCAGAAGCTGCTTCTTGATCGGAATAAGTTCTCTGGTCAGATTCCTAAATATATTGGGAGATTACAGCAACTATCTCGGATAGATTTTAGTCATAATAAGTTTTCTGGTCCAATTGTGCCTGAGATAAGTGAATGCAAGCACTTGATTTTCCTGGATCTTAGTGGGAATGAGCTTTTTGGCGAAATTCCGAAGGAGATTACAAATATGAGATTGTTGAATTATTTGAATCTTTCAAGAAACCATTTAGTTGGGGCTATTCCTGATTCAATAGTTAACATGCAGAGCTTAACTTCTGTGGACTTTTCATATAACAATCTCTCTGGTCTGGTTCTGGGAACGGGGCAATTTGGTTACTTCAATTATACATCATTTCTAGGCAACCCTCATCTATGTGGCCCTTATTTGGGGCCTTGCAAAGATGGGGTTGCCAATAGCACTAATCAAAAACATATGAAAGGCTTATTCTCTGCTCCTCTCAAGCTCTTGCTTGCTGTTGGATTGTTTTTGTGCTTAATTGCAACCGTGTTTGCAGTGATAATCAAAGCTCGATCATTGAAGAGGGCGAAAGAGTTTCGAGGTTGGAAATTAACGGCCTTCCAACGCTTGGATTTCACTGTGGATGAGATCTTAAATTGCTTGAAGGAGGAAAATAAAGGAGGTGATTGCACGTATAGAGGAGTGATGTCAAGCGGTGATCAGGTCACTATAAAAAGGCTTCCGACGATGAGTAGAGGGTGTTCGAATGACCAGAGAAACAACTCTGAGATTCAAGCTCTTGGAAGGATTCGACACCGTCACATTGTTAGATTATTGGGTTTCTGTTCAAACCAAGAAATGAATCTTTTGGTGTATGAGTACATGCCTAATGGGAGCCTCCATGAAGTTCTCCATGGCAAGAAAGGAGCTCACTTACTCTGGGACACGAGATATAAGATAGCCGTGGAAATCGCTAAAGGTCTTTGCTACCTTCACCACCATTGCTCACCGCCAATTGTCCATCGAGATGTGAAAGCAAATAACATTCTGCTAGACCCCAAGTTTGATGCTCAGCTTGCCAATTCAGGCCTTGCCAAGTTCTTACAAGGTTCGGGCACATCGAAATATATTTCTGCTGTTGATTCACATGAATATATTGCCCCAGACTGTGTCTACACACAGACTGCTGATGAGAAGGGGGATGTATATAGCTTCGGGATCGTCCTCTTGGAACTCATTAGCGGTAGGAAACCAATTGGCGAATTTAGCGATGGCGTCGACATAGTTCAATGGATTAAAAAAATGACGGACTCAAAGAAGCAAGAAGTACAGAAGATTGTTGATCAGCGACTCTCCTCAATCCCTCTTCATGAGGTGATGCACGTCTTCAACATCGCAATGCTCTGCATTGAAGAACAGGCCATAAGGCGTCCCACGATGCGGGAAGTCGTCCAATTCCTATCGGAGCTTCAGCAGCAACCGTTCTCAAATCAGGATAGGGACACTCAATAA 2916 41.6 MRLLLLLLHLFLQLHFFTSSALISESEALLSFKNSISDDPFSSLSSWNSLTNHCTWAKVTCNNNNHHVTILNLSNLNLSGTLSPDLSSLHFLTNLSFSFNRFSGKIPPEISSLSSLLHLDLSNNIFNGTIPHEFSKLENLLVFDVYNNNMTGEFPMVVTEMGNLKYLHLGGNFFTGRIPSEVGRLEFLEFLAVHGNELEGSIPPEIGNLTKLRELYIGYYNSFHGGIPAEIGNLSELVRFDAASCGLSGQIPPEIGKLKKLNILYLQLNSLSGSLPDFGNLKNMEELDLSCNVFDGEIPFSFSEMKSLKLLNLFENKFYGRIPGFIGDLPKLETLQLWNNKFSESIPQNLGKNGMLRTIDLAFNNLTGNVPPDICYGNKLETLIVMSNFLSGPIPKSLGDCVSLRRVLMWGNAINGSIPKGLLSLPNLTEVALHDNFLSGEVPITDSVSKNLLQISLSNNQLSGLLPSAIGGLSGVQKLLLDRNKFSGQIPKYIGRLQQLSRIDFSHNKFSGPIVPEISECKHLIFLDLSGNELFGEIPKEITNMRLLNYLNLSRNHLVGAIPDSIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPHLCGPYLGPCKDGVANSTNQKHMKGLFSAPLKLLLAVGLFLCLIATVFAVIIKARSLKRAKEFRGWKLTAFQRLDFTVDEILNCLKEENKGGDCTYRGVMSSGDQVTIKRLPTMSRGCSNDQRNNSEIQALGRIRHRHIVRLLGFCSNQEMNLLVYEYMPNGSLHEVLHGKKGAHLLWDTRYKIAVEIAKGLCYLHHHCSPPIVHRDVKANNILLDPKFDAQLANSGLAKFLQGSGTSKYISAVDSHEYIAPDCVYTQTADEKGDVYSFGIVLLELISGRKPIGEFSDGVDIVQWIKKMTDSKKQEVQKIVDQRLSSIPLHEVMHVFNIAMLCIEEQAIRRPTMREVVQFLSELQQQPFSNQDRDTQ 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33088540 33091774 - evm.model.ptg000014l.800 HCH14g0408 558311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0408 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 960 IPR050647 -
HCH14g0408 971 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0408 971 ProSiteProfiles Protein kinase domain profile. 686 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0408 971 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
HCH14g0408 971 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
HCH14g0408 971 FunFam Leucine-rich repeat receptor-like protein kinase TDR 62 324 - -
HCH14g0408 971 Pfam Protein tyrosine and serine/threonine kinase 706 955 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0408 971 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
HCH14g0408 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 971 - -
HCH14g0408 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0408 971 Gene3D Ribonuclease Inhibitor 278 326 IPR032675 -
HCH14g0408 971 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 331 352 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 283 304 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
HCH14g0408 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
HCH14g0408 971 SUPERFAMILY L domain-like 354 614 - -
HCH14g0408 971 Gene3D Ribonuclease Inhibitor 327 621 IPR032675 -
HCH14g0408 971 Gene3D Transferase(Phosphotransferase) domain 1 763 971 - -
HCH14g0408 971 SUPERFAMILY RNI-like 71 414 - -
HCH14g0408 971 SUPERFAMILY Protein kinase-like (PK-like) 699 955 IPR011009 -
HCH14g0408 971 Gene3D Phosphorylase Kinase; domain 1 679 762 - -
HCH14g0408 971 SMART LRR_typ_2 329 353 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 161 185 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 258 280 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 473 497 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 569 592 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 113 136 IPR003591 -
HCH14g0408 971 SMART LRR_typ_2 450 472 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0408 HCH-Chr14:33088540 HCH14g1204 HCH-Chr14:38644274 1.80E-113 dispersed
HCH14g0408 HCH-Chr14:33088540 HCH14g0409 HCH-Chr14:33102975 1.20E-16 tandem
HCH11g0739 HCH-Chr11:35953075 HCH14g0408 HCH-Chr14:33088540 9.00E-52 wgd
HCH12g0743 HCH-Chr12:4725405 HCH14g0408 HCH-Chr14:33088540 9.50E-22 wgd
HCH14g0408 HCH-Chr14:33088540 HCH4g0303 HCH-Chr4:1977884 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81230 PF07714 PK_Tyr_Ser-Thr 4.90E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0408 - - - 0.0