Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0430 ATGGAATTTAATGGTTTCAAGACCAACTCCAACGTTTTGTCTGACATGCCAGTGCAGCCACCAATCGCTTTTGTTGAACTAATCAATCTGCAAAAAATTTACCTAACAAAAAACCCTAAGATGGGTAGGGGGAAGATTGTGATCAGGAGGATTGATAACTCTGCAAGTAGGCAAGTGACTTTCTCCAAAAGGAGAAAGGGATTGCTTAAAAAGGCAAAAGAGCTGGCCATTCTTTGTGATGCAGAAGTTGGCCTCATAATCTTTTCCAGCTCTGGGAAGCAATATGAGTTTGCAAGCACCAGCATAGAATCAATAATTGAGAAACATAGCAAAAGAAAAGAGGAAGATGAACTTCTGCTGTTGAATCCAACTTCAGATATCAAGATATGGCAGAAGGAGGTAGAAACTTTAAGGCAACAACTACACAATTTGCAAGAAAATAATCGGAAATTAATGGGAGAACAACTCTATGGTTTAACCAGCAAAGACCTAAATAATCTAGAGAATCAGTTGGAATTCAGCTTACAAAGCATCCGGATTAAAAAGGAACAGATTCTAAGGGATGAAATAAAAGAGCTGAACAAAAAGGGAATACTAATGCATCAAGAAAATGTGGAACTCAGTAAGAAAGTAAATCATATTTCTCAAGAAAACATGGAGTTACAAAGAAAGATTTATGGACATGATCACTCTAGAGATATAAACTTAGCCATCGCAAATACTTTGATTCCATATGGTATTATTACCACTGCCGCCGCCACGGGAACTGAAGACGACCTTCGACTGCCGATCCATCTGCAGCTCAGCCCGGCGGAGCAACAACCTTAA 828 39.13 MEFNGFKTNSNVLSDMPVQPPIAFVELINLQKIYLTKNPKMGRGKIVIRRIDNSASRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSSGKQYEFASTSIESIIEKHSKRKEEDELLLLNPTSDIKIWQKEVETLRQQLHNLQENNRKLMGEQLYGLTSKDLNNLENQLEFSLQSIRIKKEQILRDEIKELNKKGILMHQENVELSKKVNHISQENMELQRKIYGHDHSRDINLAIANTLIPYGIITTAAATGTEDDLRLPIHLQLSPAEQQP 275
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 33325126 33330970 - evm.model.ptg000014l.778 HCH14g0430 558333
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0430 275 Coils Coil 127 154 - -
HCH14g0430 275 Coils Coil 164 184 - -
HCH14g0430 275 CDD MADS_MEF2_like 42 117 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH14g0430 275 Pfam K-box region 126 211 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g0430 275 SUPERFAMILY SRF-like 42 118 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 Coils Coil 204 224 - -
HCH14g0430 275 Gene3D - 53 122 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 219 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g0430 275 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 ProSiteProfiles K-box domain profile. 127 217 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g0430 275 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0430 275 SMART madsneu2 41 100 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0430 HCH-Chr14:33325126 HCH14g1023 HCH-Chr14:37434694 2.80E-35 dispersed
HCH3g0068 HCH-Chr3:396940 HCH14g0430 HCH-Chr14:33325126 2.80E-14 transposed
HCH12g0712 HCH-Chr12:4438182 HCH14g0430 HCH-Chr14:33325126 2.00E-50 wgd
HCH14g0430 HCH-Chr14:33325126 HCH4g0278 HCH-Chr4:1786307 1.10E-23 wgd
HCH14g0430 HCH-Chr14:33325126 HCH6g1023 HCH-Chr6:44976161 1.10E-12 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32939 PF01486 K-box 9.20E-23 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0430 K09264 - csv:101206453 348.591