Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0430 | ATGGAATTTAATGGTTTCAAGACCAACTCCAACGTTTTGTCTGACATGCCAGTGCAGCCACCAATCGCTTTTGTTGAACTAATCAATCTGCAAAAAATTTACCTAACAAAAAACCCTAAGATGGGTAGGGGGAAGATTGTGATCAGGAGGATTGATAACTCTGCAAGTAGGCAAGTGACTTTCTCCAAAAGGAGAAAGGGATTGCTTAAAAAGGCAAAAGAGCTGGCCATTCTTTGTGATGCAGAAGTTGGCCTCATAATCTTTTCCAGCTCTGGGAAGCAATATGAGTTTGCAAGCACCAGCATAGAATCAATAATTGAGAAACATAGCAAAAGAAAAGAGGAAGATGAACTTCTGCTGTTGAATCCAACTTCAGATATCAAGATATGGCAGAAGGAGGTAGAAACTTTAAGGCAACAACTACACAATTTGCAAGAAAATAATCGGAAATTAATGGGAGAACAACTCTATGGTTTAACCAGCAAAGACCTAAATAATCTAGAGAATCAGTTGGAATTCAGCTTACAAAGCATCCGGATTAAAAAGGAACAGATTCTAAGGGATGAAATAAAAGAGCTGAACAAAAAGGGAATACTAATGCATCAAGAAAATGTGGAACTCAGTAAGAAAGTAAATCATATTTCTCAAGAAAACATGGAGTTACAAAGAAAGATTTATGGACATGATCACTCTAGAGATATAAACTTAGCCATCGCAAATACTTTGATTCCATATGGTATTATTACCACTGCCGCCGCCACGGGAACTGAAGACGACCTTCGACTGCCGATCCATCTGCAGCTCAGCCCGGCGGAGCAACAACCTTAA | 828 | 39.13 | MEFNGFKTNSNVLSDMPVQPPIAFVELINLQKIYLTKNPKMGRGKIVIRRIDNSASRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSSGKQYEFASTSIESIIEKHSKRKEEDELLLLNPTSDIKIWQKEVETLRQQLHNLQENNRKLMGEQLYGLTSKDLNNLENQLEFSLQSIRIKKEQILRDEIKELNKKGILMHQENVELSKKVNHISQENMELQRKIYGHDHSRDINLAIANTLIPYGIITTAAATGTEDDLRLPIHLQLSPAEQQP | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 33325126 | 33330970 | - | evm.model.ptg000014l.778 | HCH14g0430 | 558333 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0430 | 275 | Coils | Coil | 127 | 154 | - | - | |
HCH14g0430 | 275 | Coils | Coil | 164 | 184 | - | - | |
HCH14g0430 | 275 | CDD | MADS_MEF2_like | 42 | 117 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH14g0430 | 275 | Pfam | K-box region | 126 | 211 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH14g0430 | 275 | SUPERFAMILY | SRF-like | 42 | 118 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | PRINTS | MADS domain signature | 43 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | PRINTS | MADS domain signature | 78 | 99 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | PRINTS | MADS domain signature | 63 | 78 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | Coils | Coil | 204 | 224 | - | - | |
HCH14g0430 | 275 | Gene3D | - | 53 | 122 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 41 | 219 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH14g0430 | 275 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 50 | 97 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | ProSiteProfiles | K-box domain profile. | 127 | 217 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH14g0430 | 275 | ProSiteProfiles | MADS-box domain profile. | 41 | 101 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0430 | 275 | SMART | madsneu2 | 41 | 100 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0430 | HCH-Chr14:33325126 | HCH14g1023 | HCH-Chr14:37434694 | 2.80E-35 | dispersed | |
HCH3g0068 | HCH-Chr3:396940 | HCH14g0430 | HCH-Chr14:33325126 | 2.80E-14 | transposed | |
HCH12g0712 | HCH-Chr12:4438182 | HCH14g0430 | HCH-Chr14:33325126 | 2.00E-50 | wgd | |
HCH14g0430 | HCH-Chr14:33325126 | HCH4g0278 | HCH-Chr4:1786307 | 1.10E-23 | wgd | |
HCH14g0430 | HCH-Chr14:33325126 | HCH6g1023 | HCH-Chr6:44976161 | 1.10E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32939 | PF01486 | K-box | 9.20E-23 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0430 | K09264 | - | csv:101206453 | 348.591 |