Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0431 ATGGAGAAGAAGGGTGAAAGGTGGCCATGGATTTGCAGGCTGAGGTCCTTATTAATGGCTGCCTCATACTTGTTCTTCACCTTCCATCTTGCAGCATCCACAGAAGACTCTTTTCCTCAAAGGCTCCCACGAAATTTGACGGAGACCAATTCCATGTCATTCCCCGAAGTCAAGTTACAAATGGATCCTCATGGACAGGTGGTGATGGATAATGGTTTAGTTAGAATCATTTTATCAAATCCAGAAGGTGATGTTATTGGCGTTAAATACAACGGTATTGATAATTTACTTGAAGTTCACAACGCACCACATAATAGAGGGTATTGGGACGTGGTTTGGAACTATCCAAATAAGCGAAGTGCAATTGACGGAGTAAAAGGAACAAATTTTAAGGTTATTACGGCCAGTGATGACCAGTTGGAGATTTCATTCACCAAAACTTGGAATTCTACCGACGGTGACTCCTCCTCCGCACCCTTAAACGTAGACAAAAGGTATATACTGCGGCGGGGGCAGACCGGGTTCTATGCGTATGGAATATTCGAACGCTTCCAAGGATGGCCTCAGATTGATATCGATCAAATCAGAATTGTTTACAAACTCCAAAGGGACAAATTTCATTTCATGGCTCTATCGGACGATAGACAGAGGATCATGCCGATGCCGCAAGACCGTCTTAAGGGCTGGCCTCTTGCTTATCCTGAGGCTGTTCTTTTAACTCATCCCATCAATCCAATCCTCAGAGGAGAGGTGGATGATAAGTATCAGTACTCAATAGAGAATCAAGACAATAAGGTCCATGGATGGACCTGCGCGGACCCACACGTGGGATTCTGGATGATCACACCAAGCAACGAGTTCCGCATGGCAGGGCCCGTCAAGCAAGATCTCACTTCGCACGTGGGCCCTATTACCCTCTCCATGTTTGTGAGTACACATTATGCGGGTAAAGAAGTTGGAATGAGATTTGAAGAAGGGGAGGCATGGAAGAAGGTATTTGGGCCTGTCTTTGTTTATCTCAATTCTTTCCAAACTCCCAATGTGGATTCGGTCTCCCTATGGGAAGATGCTAAAAAACAGATGGAGTCAGAAGTTGGTAGTTGGCCGTACAACTTTGCTCAATCCGAAGAATTCCTATCCTACGATCAGCGGGGATCGGTTGCGGGTCAATTGCTAGTCCGTGATAGATATGCGAGCAACACCTTATCGTGGGCAAATTCTGCGTACGTTGGCCTAGCAGCTCCAGGAGAGGCCGGATCCTGGCAAAGAGAAAGCAAGGGATACCAATTCTGGACACAAGCAAACGCAACAGGACATTTCACAATTCAAAACATAAGACCAGGAAACTACAGTCTCCATGCATGGGTCCCCGGCTTCATCGGCGATTACATCTCCGATTCCATAATCACCGTCACAGCAAATTCACGTACCGTTTTAAACTCACTAGAATTCATCCCTCCAAGACAAGGCCCCACTCTCTGGGAAATCGGGATTCCCGATCGTACGGCAGCTGAGTTTTACGTGCCGGATCCCTACCACACCCTCATGAACCGTCTATACCACAATAACCTAAAAACCCCCGACCACGAAAAGTTCCGACAGTACGGTTTGTGGTATCGTTACGCTGACTTATATCCGACGAGCGACCTCGTATTCACTGCCGGAGTTGACGACTACCGCCGTGACTGGTTTTTCGCCCACGTCACTAGATACGTCGGAAACGGAATGTATAGAGCAACGACGTGGCAAATAAGATTTTGGCTTGATAGTGTGAAAGAAACGGGAAATTACACGCTTCAATTGGCTTTGGCATCTGCCACTGATTCCGTACTTCAAATCCGGTTCAATGGGGTGGGAGATGGACCGGCTCATTTCTCAACTGGCCGGATTGGGAGGGATAATGCTATTGCAAGACATGGGATTCATGGGTTGTATTGGTTATTTAGTATTAATGTTCCAAATGCAGTTTTGGTTGATGGAGAAAATGTGATTTATTTGAAGCAATCAAATGGGAGGAGTCCATTTCAAGGAGTTATGTATGATTATATACGACTTGAAGGCCCGTCGTTTGATTGA 2076 46.05 MEKKGERWPWICRLRSLLMAASYLFFTFHLAASTEDSFPQRLPRNLTETNSMSFPEVKLQMDPHGQVVMDNGLVRIILSNPEGDVIGVKYNGIDNLLEVHNAPHNRGYWDVVWNYPNKRSAIDGVKGTNFKVITASDDQLEISFTKTWNSTDGDSSSAPLNVDKRYILRRGQTGFYAYGIFERFQGWPQIDIDQIRIVYKLQRDKFHFMALSDDRQRIMPMPQDRLKGWPLAYPEAVLLTHPINPILRGEVDDKYQYSIENQDNKVHGWTCADPHVGFWMITPSNEFRMAGPVKQDLTSHVGPITLSMFVSTHYAGKEVGMRFEEGEAWKKVFGPVFVYLNSFQTPNVDSVSLWEDAKKQMESEVGSWPYNFAQSEEFLSYDQRGSVAGQLLVRDRYASNTLSWANSAYVGLAAPGEAGSWQRESKGYQFWTQANATGHFTIQNIRPGNYSLHAWVPGFIGDYISDSIITVTANSRTVLNSLEFIPPRQGPTLWEIGIPDRTAAEFYVPDPYHTLMNRLYHNNLKTPDHEKFRQYGLWYRYADLYPTSDLVFTAGVDDYRRDWFFAHVTRYVGNGMYRATTWQIRFWLDSVKETGNYTLQLALASATDSVLQIRFNGVGDGPAHFSTGRIGRDNAIARHGIHGLYWLFSINVPNAVLVDGENVIYLKQSNGRSPFQGVMYDYIRLEGPSFD 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33339770 33346789 + evm.model.ptg000014l.777 HCH14g0431 558334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0431 691 SUPERFAMILY Galactose-binding domain-like 490 686 IPR008979 -
HCH14g0431 691 FunFam Rhamnogalacturonate lyase B 380 478 - -
HCH14g0431 691 CDD RGL4_C 494 686 - -
HCH14g0431 691 Gene3D - 62 357 IPR014718 GO:0030246(InterPro)
HCH14g0431 691 SUPERFAMILY Galactose mutarotase-like 74 349 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH14g0431 691 Pfam Polysaccharide lyase family 4, domain III 492 685 IPR029411 -
HCH14g0431 691 Gene3D - 381 481 - -
HCH14g0431 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 689 IPR051850 -
HCH14g0431 691 Pfam Rhamnogalacturonate lyase family 61 251 IPR010325 -
HCH14g0431 691 CDD RGL4_N 66 346 - -
HCH14g0431 691 Gene3D - 490 686 - -
HCH14g0431 691 Pfam Polysaccharide lyase family 4, domain II 406 477 IPR029413 -
HCH14g0431 691 SUPERFAMILY Starch-binding domain-like 382 480 IPR013784 GO:0030246(InterPro)
HCH14g0431 691 CDD RGL4_M 383 482 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0431 HCH-Chr14:33339770 HCH14g0806 HCH-Chr14:36044308 2.70E-188 dispersed
HCH11g0750 HCH-Chr11:36621399 HCH14g0431 HCH-Chr14:33339770 6.30E-246 wgd
HCH12g0709 HCH-Chr12:4407137 HCH14g0431 HCH-Chr14:33339770 1.60E-213 wgd
HCH14g0431 HCH-Chr14:33339770 HCH4g0262 HCH-Chr4:1643091 2.40E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0431 K18195 - rcu:8259683 870.922