Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0447 ATGGCGAAGGAGAAAATTCAGATCAGGAAGATCGACAACGCGACGGCGAGGCAAGTCACGTTCTCGAAGCGTCGGAGAGGGCTTTTCAAGAAAGCTAAGGAGTTGTCCGTTCTTTGTGATGCTGACGTGGCACTCATCATCTTCTCCTCCACTAGGAAGCTCTTTGAATACTCTAGCTCAAGCATGAGGGGGATTATAGAAAAGCATAATTTGCACTCTAAGAATCTGCAGAAAATGGAACAACCATCCCTTGAACTGCGGCTAGTGGAAAACAGCAACCACAGCAGATTAAACAGGGAAATTGCTGAGAAAACCCGCCAATTAAGGCAGTTGAGAGGAGAGGATCTCCAAGCAATGAATATAGAGGAACTGCTGCGGCTAGAGAAGTCACTGGAGTCTGGATTGAACCGTGTGATGGAGAAAAAGGGTGAGAGAATCATGAAAGAGATAAATGATCTTCAAAGAAAGTCATCAGAATTGATGGAAGAGAACAAGCGGCTGAGAAAGCAAGCGGAGATGGTGAATGGAGGAAGGTTTCCGATGGGTGCTGAGTCCGATATCTTGCTCATCGAAGAAGGCCAGTCATCCGACTCAGTCACCGACGCCTGTATCTCCAACTCCAACAATGGCCCTCCTCAAGATCTCGAAAGCTCAGACACATCTCTCAAATTAGGGCTGCCATATTCAGGGTGA 693 47.04 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSSTRKLFEYSSSSMRGIIEKHNLHSKNLQKMEQPSLELRLVENSNHSRLNREIAEKTRQLRQLRGEDLQAMNIEELLRLEKSLESGLNRVMEKKGERIMKEINDLQRKSSELMEENKRLRKQAEMVNGGRFPMGAESDILLIEEGQSSDSVTDACISNSNNGPPQDLESSDTSLKLGLPYSG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33491842 33495137 - evm.model.ptg000014l.761 HCH14g0447 558350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0447 230 FunFam Transcription factor, MADS-box 13 83 - -
HCH14g0447 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH14g0447 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 Coils Coil 94 114 - -
HCH14g0447 230 Coils Coil 136 170 - -
HCH14g0447 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 MobiDBLite consensus disorder prediction 190 230 - -
HCH14g0447 230 MobiDBLite consensus disorder prediction 191 230 - -
HCH14g0447 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g0447 230 Pfam K-box region 92 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g0447 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g0447 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g0447 230 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0963 HCH-Chr11:41040013 HCH14g0447 HCH-Chr14:33491842 2.40E-44 dispersed
HCH14g0097 HCH-Chr14:18756755 HCH14g0447 HCH-Chr14:33491842 6.60E-11 dispersed
HCH14g0447 HCH-Chr14:33491842 HCH9g0327 HCH-Chr9:2041713 9.80E-26 dispersed
HCH4g1682 HCH-Chr4:18444783 HCH14g0447 HCH-Chr14:33491842 1.00E-40 transposed
HCH13g1176 HCH-Chr13:38373318 HCH14g0447 HCH-Chr14:33491842 1.60E-25 wgd
HCH14g0447 HCH-Chr14:33491842 HCH4g0278 HCH-Chr4:1786307 1.50E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32941 PF01486 K-box 1.50E-15 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0447 - - - 0.0