Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0447 | ATGGCGAAGGAGAAAATTCAGATCAGGAAGATCGACAACGCGACGGCGAGGCAAGTCACGTTCTCGAAGCGTCGGAGAGGGCTTTTCAAGAAAGCTAAGGAGTTGTCCGTTCTTTGTGATGCTGACGTGGCACTCATCATCTTCTCCTCCACTAGGAAGCTCTTTGAATACTCTAGCTCAAGCATGAGGGGGATTATAGAAAAGCATAATTTGCACTCTAAGAATCTGCAGAAAATGGAACAACCATCCCTTGAACTGCGGCTAGTGGAAAACAGCAACCACAGCAGATTAAACAGGGAAATTGCTGAGAAAACCCGCCAATTAAGGCAGTTGAGAGGAGAGGATCTCCAAGCAATGAATATAGAGGAACTGCTGCGGCTAGAGAAGTCACTGGAGTCTGGATTGAACCGTGTGATGGAGAAAAAGGGTGAGAGAATCATGAAAGAGATAAATGATCTTCAAAGAAAGTCATCAGAATTGATGGAAGAGAACAAGCGGCTGAGAAAGCAAGCGGAGATGGTGAATGGAGGAAGGTTTCCGATGGGTGCTGAGTCCGATATCTTGCTCATCGAAGAAGGCCAGTCATCCGACTCAGTCACCGACGCCTGTATCTCCAACTCCAACAATGGCCCTCCTCAAGATCTCGAAAGCTCAGACACATCTCTCAAATTAGGGCTGCCATATTCAGGGTGA | 693 | 47.04 | MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSSTRKLFEYSSSSMRGIIEKHNLHSKNLQKMEQPSLELRLVENSNHSRLNREIAEKTRQLRQLRGEDLQAMNIEELLRLEKSLESGLNRVMEKKGERIMKEINDLQRKSSELMEENKRLRKQAEMVNGGRFPMGAESDILLIEEGQSSDSVTDACISNSNNGPPQDLESSDTSLKLGLPYSG | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 33491842 | 33495137 | - | evm.model.ptg000014l.761 | HCH14g0447 | 558350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0447 | 230 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
HCH14g0447 | 230 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH14g0447 | 230 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | Coils | Coil | 94 | 114 | - | - | |
HCH14g0447 | 230 | Coils | Coil | 136 | 170 | - | - | |
HCH14g0447 | 230 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | MobiDBLite | consensus disorder prediction | 190 | 230 | - | - | |
HCH14g0447 | 230 | MobiDBLite | consensus disorder prediction | 191 | 230 | - | - | |
HCH14g0447 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH14g0447 | 230 | Pfam | K-box region | 92 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH14g0447 | 230 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 195 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH14g0447 | 230 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH14g0447 | 230 | SUPERFAMILY | SRF-like | 3 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0963 | HCH-Chr11:41040013 | HCH14g0447 | HCH-Chr14:33491842 | 2.40E-44 | dispersed | |
HCH14g0097 | HCH-Chr14:18756755 | HCH14g0447 | HCH-Chr14:33491842 | 6.60E-11 | dispersed | |
HCH14g0447 | HCH-Chr14:33491842 | HCH9g0327 | HCH-Chr9:2041713 | 9.80E-26 | dispersed | |
HCH4g1682 | HCH-Chr4:18444783 | HCH14g0447 | HCH-Chr14:33491842 | 1.00E-40 | transposed | |
HCH13g1176 | HCH-Chr13:38373318 | HCH14g0447 | HCH-Chr14:33491842 | 1.60E-25 | wgd | |
HCH14g0447 | HCH-Chr14:33491842 | HCH4g0278 | HCH-Chr4:1786307 | 1.50E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32941 | PF01486 | K-box | 1.50E-15 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0447 | - | - | - | 0.0 |