Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0459 ATGGATTTCGAAGAACAAGACGAACACGAAGAAGAAGAGATGGAGATGGTGGCCGCGAGCTACGACTCCCTCGGCAACAACTCAACTCCGCGGGTCAAAATGCCGAGCAATGAGCAGGGCCATCGGAAGCCACGTTACAGGGAGTGTTTAAAGAATCACGCAGTCGGGCTCGGCGGCCACGCTCTAGACGGCTGCGGAGAGTTTCTCGCAGCTGGCGCTGAAGGCACGCTCGACGGTCTCAAATGCGCAGCGTGTAACTGCCACCGTAACTTCCACCGAAAAGAGACCGATACAGGAGCCGGTCTGGGAGAGCCATTTCTACTTCCTCATCATCCTCATCCACATCCACAGTTAATCTCTCCTTACTATAGAACCCCGGCAGGGTACCTCCACGTGGCGCCACATCATAGGCCGCTGGCTCTGCCTTCAACGTCCGGCGGCGGCGGGACACATAGTAGGGAGGATCAGGAAGACATGTCAAACCCTAGCGGTGGAGGAGGAAGTAGTTTAGGAAAGAAGAGACATAGAACGAAGTTTACGCAAGAACAGAAAGATAGAATGCTGGGATTGGCTGAAACACTTGGATGGAGGATTCAGAAACATGATGAAGCTGTGGTGCAGCAATTCTGCAACGAGACAGGAGTGAAGCGTCATGTTCTTAAAGTTTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAG 708 52.4 MDFEEQDEHEEEEMEMVAASYDSLGNNSTPRVKMPSNEQGHRKPRYRECLKNHAVGLGGHALDGCGEFLAAGAEGTLDGLKCAACNCHRNFHRKETDTGAGLGEPFLLPHHPHPHPQLISPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREDQEDMSNPSGGGGSSLGKKRHRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNETGVKRHVLKVWMHNNKHTLGKKP 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33591762 33592469 - evm.model.ptg000014l.749 HCH14g0459 558362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0459 235 NCBIfam homeobox domain, ZF-HD class 172 228 IPR006455 -
HCH14g0459 235 MobiDBLite consensus disorder prediction 1 42 - -
HCH14g0459 235 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
HCH14g0459 235 MobiDBLite consensus disorder prediction 1 17 - -
HCH14g0459 235 MobiDBLite consensus disorder prediction 137 183 - -
HCH14g0459 235 SUPERFAMILY Homeodomain-like 162 233 IPR009057 -
HCH14g0459 235 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
HCH14g0459 235 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 231 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH14g0459 235 MobiDBLite consensus disorder prediction 21 35 - -
HCH14g0459 235 FunFam Zinc-finger homeodomain protein 2 160 233 - -
HCH14g0459 235 Gene3D - 156 233 - -
HCH14g0459 235 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0459 HCH-Chr14:33591762 HCH1g0163 HCH-Chr1:12945090 8.70E-46 dispersed
HCH14g0459 HCH-Chr14:33591762 HCH4g0254 HCH-Chr4:1570917 2.00E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32943 PF04770 ZF-HD_dimer 5.50E-28 No_clan HCH TF