Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0481 ATGTCTCTGAACTCCTGCGAATCCTCCTCCATGGACTTTTCCAGAGATCCACGTGTCCTTTTACAGAACCTCTCAGAAATCCAGTTAAAAGTAGACTCAGTTTCACGCTTCTTATCAGAATCCATCAACAGAAAAACCCTTGTTAACAACAACCAAATGGATTCAATATCATCTGAAATCTCCTCCGCCATCCATCAAATCATCGTCAACGGCACTTCTCTTTTAACTACGTCCGAAAACCCCAAAACCCAACAAGACCCAGATTCCGAAATCGTGGAATTAGACGCCGAGGAGTTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGTAAAGGGTTTAAGCGCGATGCCAATTTACGCATGCACATGCGCGCACATGGGAACCAATTCAAGACGCTAGAGGCATTGGCGAAGCCGCTGGCGCCGGAGCTGGAAATGAATAATAATAAACAACGGAGGCGAAGATTCTCGTGTCCTTACGAGGGGTGTAGTAGGAATAAAGGGCACGAGAAGTTCAAGGCTTTGAAATCAGTGATCTGCGTTAAAAATCATTTTAAGAGGAGTCATTGTCCGAAGATGTTTGCTTGCGATCGATGTAATAAGAAGAAGTTTTCGGTGGTGGGGGATTTGAAGAGCCATTTGAAGCATTGTGGAGAGAGGAAGTGGCTGTGTTCGTGTGGGACAAGCTTTTCTCGGAAGGATAAGTTGTTTGGTCATCTGGGTTTGTTTGAAGGACATATGCCGGCGGTGGAGGATGATGGGGTCGGGAAATCCGCGGCGGTGGAGGCGGGGGCGGTGGCGACGGAGGCGGTGGTGGGTGAAGATGTGGATTTTGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCGATGTTTACAAGATGTGTGGGGATTTTCCAATGATTTGGATTGCGATTGGGCATTTTTGTGA 936 47.01 MSLNSCESSSMDFSRDPRVLLQNLSEIQLKVDSVSRFLSESINRKTLVNNNQMDSISSEISSAIHQIIVNGTSLLTTSENPKTQQDPDSEIVELDAEELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTLEALAKPLAPELEMNNNKQRRRRFSCPYEGCSRNKGHEKFKALKSVICVKNHFKRSHCPKMFACDRCNKKKFSVVGDLKSHLKHCGERKWLCSCGTSFSRKDKLFGHLGLFEGHMPAVEDDGVGKSAAVEAGAVATEAVVGEDVDFESFLDGFGSIENRCLQDVWGFSNDLDCDWAFL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33837425 33838360 - evm.model.ptg000014l.727 HCH14g0481 558384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0481 311 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
HCH14g0481 311 Gene3D Classic Zinc Finger 105 158 - -
HCH14g0481 311 SUPERFAMILY beta-beta-alpha zinc fingers 102 128 IPR036236 -
HCH14g0481 311 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 85 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
HCH14g0481 311 SMART c2h2final6 105 127 IPR013087 -
HCH14g0481 311 SMART c2h2final6 195 217 IPR013087 -
HCH14g0481 311 SMART c2h2final6 157 190 IPR013087 -
HCH14g0481 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
HCH14g0481 311 Gene3D Classic Zinc Finger 184 252 - -
HCH14g0481 311 FunFam Zinc finger protein 574 105 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1467 HCH-Chr12:40036919 HCH14g0481 HCH-Chr14:33837425 4.80E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32945 PF12874 zf-met 0.0025 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0481 - - - 0.0