Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0490 ATGGCAGCAGCTATAGATACATACTATATGGATCCATTTAGTGAAGAATTAATGAGAGCACTTGAGCCTTTTATGAAAAGTGCTGTTTTTTCTTCTTATTCTGAGCCAAAATTGAGCTCTGATTTATGCTCTCCATCAAGAACCCACATATTTTCTCAAGGGTTCTCAAACTTTGACCAAATAGGTCATGAGCAATCAGGTCCAATTGGGCTAAACAATCTCACTCCTTCTCAAATTCTGCAAATTCAATCTCAAAATATTGCTATGATCACTTCTTCTTCTTCTTCTTTACTAAATAGTCATAGATTTCTTGCACCAAAATCCATTCCCATGAAGCAAATTGTCAACCCCTCAAAACCCAGTAAGCTTTATAGAGGAGTAAGACAACGCCATTGGGGTAAATGGGTGGCGGAAATTAGACTCCCTAAAAACCGTACACGGCTCTGGCTTGGCACTTTTGATGCAGCAGAGGAAGCTGCTTTGGCTTATGATAAAGCCGCTTATAAGCTGAGGGGAGAATTCTCTAAGCTTAATTTCCCACATCTTAGGCATAGATTTGGAGAATTCAAGCCTCTCCATCCTTCCGTTGACGCTAAACTTGAGGCGATTTGCCGTAGCTTAACAGGGTCTCAGAAACAGGGGAAAACAGGGAAGCTCTGTTTTGTTGCTGATGAAAAATTGAGCATTTCCGCTTTGTCTGAACCTAACTTGGTGGCTGATAATTTGTTGGAATTGGATGTCAAGAGTGAAGTGGAAAGTTCTTCATCTTCGTCGTCGCCGTCGTCGTTTCCGTGTCAGTCTCGAGAAGAGTACTCGACGGAATCTTCACCGAAATCTAGTATTAGCTTCTTGGATTTTACAGATTGTGAATGGGGTGAAGCGGAGACCTTTGGATTGGAAAAATATCCGTCTGTTGAAATTGATTGGGCAGCGCTTAATCAGCTCTCTGAGTGTTAA 957 41.48 MAAAIDTYYMDPFSEELMRALEPFMKSAVFSSYSEPKLSSDLCSPSRTHIFSQGFSNFDQIGHEQSGPIGLNNLTPSQILQIQSQNIAMITSSSSSLLNSHRFLAPKSIPMKQIVNPSKPSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDAAEEAALAYDKAAYKLRGEFSKLNFPHLRHRFGEFKPLHPSVDAKLEAICRSLTGSQKQGKTGKLCFVADEKLSISALSEPNLVADNLLELDVKSEVESSSSSSSPSSFPCQSREEYSTESSPKSSISFLDFTDCEWGEAETFGLEKYPSVEIDWAALNQLSEC 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33908997 33909953 + evm.model.ptg000014l.718 HCH14g0490 558393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0490 318 Gene3D AP2/ERF domain 123 181 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 312 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH14g0490 318 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 SMART rav1_2 123 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 FunFam Ethylene-responsive transcription factor 2 122 181 - -
HCH14g0490 318 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677(InterPro)
HCH14g0490 318 Pfam AP2 domain 123 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 MobiDBLite consensus disorder prediction 252 280 - -
HCH14g0490 318 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0490 318 CDD AP2 122 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0490 HCH-Chr14:33908997 HCH4g0203 HCH-Chr4:1221660 2.90E-60 dispersed
HCH14g0490 HCH-Chr14:33908997 HCH6g1261 HCH-Chr6:46921751 1.50E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32947 PF00847 AP2 9.10E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0490 K09286 - csv:101211347 369.392