Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0490 | ATGGCAGCAGCTATAGATACATACTATATGGATCCATTTAGTGAAGAATTAATGAGAGCACTTGAGCCTTTTATGAAAAGTGCTGTTTTTTCTTCTTATTCTGAGCCAAAATTGAGCTCTGATTTATGCTCTCCATCAAGAACCCACATATTTTCTCAAGGGTTCTCAAACTTTGACCAAATAGGTCATGAGCAATCAGGTCCAATTGGGCTAAACAATCTCACTCCTTCTCAAATTCTGCAAATTCAATCTCAAAATATTGCTATGATCACTTCTTCTTCTTCTTCTTTACTAAATAGTCATAGATTTCTTGCACCAAAATCCATTCCCATGAAGCAAATTGTCAACCCCTCAAAACCCAGTAAGCTTTATAGAGGAGTAAGACAACGCCATTGGGGTAAATGGGTGGCGGAAATTAGACTCCCTAAAAACCGTACACGGCTCTGGCTTGGCACTTTTGATGCAGCAGAGGAAGCTGCTTTGGCTTATGATAAAGCCGCTTATAAGCTGAGGGGAGAATTCTCTAAGCTTAATTTCCCACATCTTAGGCATAGATTTGGAGAATTCAAGCCTCTCCATCCTTCCGTTGACGCTAAACTTGAGGCGATTTGCCGTAGCTTAACAGGGTCTCAGAAACAGGGGAAAACAGGGAAGCTCTGTTTTGTTGCTGATGAAAAATTGAGCATTTCCGCTTTGTCTGAACCTAACTTGGTGGCTGATAATTTGTTGGAATTGGATGTCAAGAGTGAAGTGGAAAGTTCTTCATCTTCGTCGTCGCCGTCGTCGTTTCCGTGTCAGTCTCGAGAAGAGTACTCGACGGAATCTTCACCGAAATCTAGTATTAGCTTCTTGGATTTTACAGATTGTGAATGGGGTGAAGCGGAGACCTTTGGATTGGAAAAATATCCGTCTGTTGAAATTGATTGGGCAGCGCTTAATCAGCTCTCTGAGTGTTAA | 957 | 41.48 | MAAAIDTYYMDPFSEELMRALEPFMKSAVFSSYSEPKLSSDLCSPSRTHIFSQGFSNFDQIGHEQSGPIGLNNLTPSQILQIQSQNIAMITSSSSSLLNSHRFLAPKSIPMKQIVNPSKPSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDAAEEAALAYDKAAYKLRGEFSKLNFPHLRHRFGEFKPLHPSVDAKLEAICRSLTGSQKQGKTGKLCFVADEKLSISALSEPNLVADNLLELDVKSEVESSSSSSSPSSFPCQSREEYSTESSPKSSISFLDFTDCEWGEAETFGLEKYPSVEIDWAALNQLSEC | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 33908997 | 33909953 | + | evm.model.ptg000014l.718 | HCH14g0490 | 558393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0490 | 318 | Gene3D | AP2/ERF domain | 123 | 181 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 13 | 312 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
HCH14g0490 | 318 | PRINTS | Ethylene responsive element binding protein signature | 146 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | PRINTS | Ethylene responsive element binding protein signature | 124 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | SMART | rav1_2 | 123 | 186 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | FunFam | Ethylene-responsive transcription factor 2 | 122 | 181 | - | - | |
HCH14g0490 | 318 | SUPERFAMILY | DNA-binding domain | 123 | 181 | IPR016177 | GO:0003677(InterPro) | |
HCH14g0490 | 318 | Pfam | AP2 domain | 123 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | MobiDBLite | consensus disorder prediction | 252 | 280 | - | - | |
HCH14g0490 | 318 | ProSiteProfiles | AP2/ERF domain profile. | 123 | 180 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH14g0490 | 318 | CDD | AP2 | 122 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0490 | HCH-Chr14:33908997 | HCH4g0203 | HCH-Chr4:1221660 | 2.90E-60 | dispersed | |
HCH14g0490 | HCH-Chr14:33908997 | HCH6g1261 | HCH-Chr6:46921751 | 1.50E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32947 | PF00847 | AP2 | 9.10E-14 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0490 | K09286 | - | csv:101211347 | 369.392 |