Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0542 ATGACCGGCGGTGGCTCATCAGGAAGAACGCCGACGTGGAAAGAGAGAGAAAACAATAAAAGAAGAGAGAGAAGAAGGAGAGCCATTGCTGCGAAGATCTACACTGGTCTTAGAGCTCAAGGAAATTATAAACTTCCTAAACACTGTGATAATAATGAAGTCTTGAAAGCTCTCTGTAATGAAGCTGGTTGGATTGTCGAAGAAGATGGTACTACCTATCGTAAGGGATGTAAGCCACCGATTAATGAAATTGGGAATTCAGGAAATATGAGTGCTTGTTCTTCTCTTCAACCAAGTCCACAATCTTCATGTTTCCCCAGTCCTGTTCCCTCTTACCATGCGAGTCCTACTTCGTCTTCATTTCCGAGCCCGACTCGATTCGATGCGAATCCGTCTTCTTATCTTCTGCCTTTCCTTCAGAATATATCTTCAATTCCTGCTAATTTGCCTCCTCTTAGGATATCGAATAGTGCACCTGTTACCCCGCCTCTTTCTTCCCCGACTTCCAGGGGTTCGAAGCGGAAGCCTGATTGGGAGTCGATTTCCAATAGCTACTTGGCCTCGTTCCGTCATCCTCTGTTTGCTGCTTCTGCTCCTTCGAGCCCTACGCGGCGTTATAATCTTACACCGGCCACGATTCCCGAATGTGATGAGTCGGATGCTTCGACTGTGGATTCTGGTCGATGGGTTAGTTTTCAGACGGTGGCGCCTTCTGTGGCTCCTCCTTCCCCTACCTTTAATTTGATGAAGCCTGTGAATCAGCTGAATTCTCTTCATGATGCTGTTGGTGGACATGGAGGGATGGGGTGGGTTACGGCTTCTGATAAAGGACATGGCTCGGAGTTTGAATTTGAGAGTGGTAGAGTGAAGCCGTGGGAGGGTGAAAGAATTCATGAAGTTGGTGTAGAGGATCTGGAGCTTACGCTTGGGAGTGGGAGTGGGAGTGGGAAGATCCGTGGTTAA 963 47.66 MTGGGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWIVEEDGTTYRKGCKPPINEIGNSGNMSACSSLQPSPQSSCFPSPVPSYHASPTSSSFPSPTRFDANPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESISNSYLASFRHPLFAASAPSSPTRRYNLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVNQLNSLHDAVGGHGGMGWVTASDKGHGSEFEFESGRVKPWEGERIHEVGVEDLELTLGSGSGSGKIRG 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34338236 34339408 + evm.model.ptg000014l.666 HCH14g0542 558445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0542 320 MobiDBLite consensus disorder prediction 1 24 - -
HCH14g0542 320 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 313 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
HCH14g0542 320 MobiDBLite consensus disorder prediction 155 171 - -
HCH14g0542 320 MobiDBLite consensus disorder prediction 155 177 - -
HCH14g0542 320 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0734 HCH-Chr3:5279590 HCH14g0542 HCH-Chr14:34338236 5.20E-49 transposed
HCH6g0624 HCH-Chr6:37496919 HCH14g0542 HCH-Chr14:34338236 1.70E-47 transposed
HCH14g0542 HCH-Chr14:34338236 HCH4g0706 HCH-Chr4:4591031 2.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32948 PF05687 BES1_N 2.80E-64 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0542 K14503 - csv:101216171 509.605