Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0546 ATGTTCAAGTGCTTATTAGTCATTGCCTCGTTGATCCTTTCGGCCATTGCTCAGGACACACCTGATCCAAATAACAAATGGCTCACTTTGAGTGGGGAAGAGCCTATAGTAATAGCAAGAGGTGGGTTATCAGGAGTGTTTCCAGAATCCAGTTCATTTGCTAATCAAATGGCAGTTGTTTTGAGTTTGCAAAATGCAGTTTTATTCTGCAATTTGCAACTGACAAAAGATGGGATAGGAATCTGCTTATCGGATATTAGACTTGATAATTCAACAAATATTGCACTTATCTATCCAAAAGCTCAAAAGTCCTACACTATTAATGGAAAGGTTGAAAAAGGATGGTTTCCTTTTGATTACGATTCTGATGATCTTTTCAAGAAAGTTGGCTTGATTCAGAGTACATACTCCAGACCTAGTTTGTTTGATAATGAGTTCCCAGTATCTGCTGTTGAAGATGTGGCTGGAATTAAACCTTACCAATTCTGGTTAAACGTTCCGTACGATTCATTCTATACACAGCATAATCTCAGTACAGTATCATATGTTCAAAAAGCATTGAGATTTCTTCGGATAAACTATCTCTCATCTCCCGAGATCGGTTTCTTGAAAGCGGTTAGCGGAAATGTGAACAAAGCAAGGACAAAACTCATCTTCCAGTTCATGAGACCTGACGATTTGGAACCAACAACTCAAAAAACGTATGGTTCACTGACTGAGGATCTTGCTTTGATCAAGACCTTTGCCTCTGGAATCTTGGTTCCAAAAGAATATATATGGCCTCTTAATAAAGACAAGTACTTGGAAGCTGCAACTGATCTTGTGGCTAATGCTCATAAGGAAGGCTTGGAAGTACATGCTTCTGGTTTTGCAAATGACTTTTTTTCAAGTTATAATTATAGTTATGATCCAATTAGTGAGTACTTGCAATATGTGGATAATGGTCAATTTTCTGTTGATGGGATCCTCTCAGACTTCTCTCCTACTGCATCAGAAGCCATCGCATGTTTTTCTGGTAACAAAACCAGTGGCAAACCCAAGCCTGGAGAACCATTGATCATATCTAGCAATGGAGCAAGTGGGATTTATCCTTCATGTACTGATTTGGCATATCAAAGGGCAGTTGATGATGGAGCTGATATAATAGATTGCACAGTTCAATTATCCAAAGATGGAATTCCTTTCTGTTTGGATGTTGCAGATCTTACTGTCAGTACCACTGCTATTACTGTTTTCATGGGTCGAACTTTAACCATTCCAGAAATTCAAGCAGAACCTGGAATCTTTTCCTTTGATCTTACATGGGCTGAGATTCAATCTCTCAAACCTGAAATCACAAACCCATTTCAAGCTAGTTCTGCAATTGCCAGAAATCCAGCTTATAAGTTCAAGGGTAAACTTTTTACTCTTGCTGAGTTTTTGGAATTTTCAAAAACCAAGGCTGTCACTGGTGTTATGATCAATATTCAAAACGCCGCCTACTTAGCTGGAAAGAAAGGCTTAGACATCGTCGGAGCTGTAAGCACTGCCCTGAGTTCCGCCGCCTGGGACAAGCAATCAACTCAACGGGTCTTCATCAAGTCAGATGACACATCAGTCCTATCCAAATTCAAAAACATTCCAACTTATACAAAAGTTTTAACCCTAGAAGAGAAAATTGGAGACGCGCCAAAGCAGTCATTGGAGGAGATCAAGAAATATGCAGAAGCAGTTGCCATTCCCAGAGCTTCAGTCGTCAAGATTACCGATTACTTCACCACTGGTTTGACCAACGTTGTGAAGGAAATGAAGGCTGCAAATCTCACTGTTTTCGTCTACGTCATTAGAAACGAATTCGTTACTTTGGCTTTTGATTACTTCTCTGATCCTATGATGGAGATCGCCACTTACGTCGATGCCATCAAAGTCGATGGACTCATGACTGAATATCCAGCCACCATTAGAAAATACTTGAATTGTCCATGCAGAGTCACAAACAAGGAGAAGGACCAAAATCAATACACCATTTTGCCGCCGGAAATCGGTTCGATGCTCAGTTTGTTGCCGGCCAATGTCAAACCACCAGCAGAAGCACCAAATCCACCATTGGAGGTGGCAGATGTCGTCGACCCACCGCTACCCCCGGTGGCCAACATATCTCCCGCAACGGCAGCTGATGGGCCAACCGGCAGCAATAGTACTTCAAGTGCTGTTTCAAACATCGCTAACGTGAATCCTTGGCTAGTTTCAATGGTGGTGATTAGCTTGCTGTCTATGGTGTAA 2262 41.25 MFKCLLVIASLILSAIAQDTPDPNNKWLTLSGEEPIVIARGGLSGVFPESSSFANQMAVVLSLQNAVLFCNLQLTKDGIGICLSDIRLDNSTNIALIYPKAQKSYTINGKVEKGWFPFDYDSDDLFKKVGLIQSTYSRPSLFDNEFPVSAVEDVAGIKPYQFWLNVPYDSFYTQHNLSTVSYVQKALRFLRINYLSSPEIGFLKAVSGNVNKARTKLIFQFMRPDDLEPTTQKTYGSLTEDLALIKTFASGILVPKEYIWPLNKDKYLEAATDLVANAHKEGLEVHASGFANDFFSSYNYSYDPISEYLQYVDNGQFSVDGILSDFSPTASEAIACFSGNKTSGKPKPGEPLIISSNGASGIYPSCTDLAYQRAVDDGADIIDCTVQLSKDGIPFCLDVADLTVSTTAITVFMGRTLTIPEIQAEPGIFSFDLTWAEIQSLKPEITNPFQASSAIARNPAYKFKGKLFTLAEFLEFSKTKAVTGVMINIQNAAYLAGKKGLDIVGAVSTALSSAAWDKQSTQRVFIKSDDTSVLSKFKNIPTYTKVLTLEEKIGDAPKQSLEEIKKYAEAVAIPRASVVKITDYFTTGLTNVVKEMKAANLTVFVYVIRNEFVTLAFDYFSDPMMEIATYVDAIKVDGLMTEYPATIRKYLNCPCRVTNKEKDQNQYTILPPEIGSMLSLLPANVKPPAEAPNPPLEVADVVDPPLPPVANISPATAADGPTGSNSTSSAVSNIANVNPWLVSMVVISLLSMV 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34381414 34385298 - evm.model.ptg000014l.662 HCH14g0546 558449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0546 753 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 349 651 - -
HCH14g0546 753 ProSiteProfiles GP-PDE domain profile. 351 651 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 SUPERFAMILY PLC-like phosphodiesterases 350 652 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 ProSiteProfiles GP-PDE domain profile. 35 334 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 4 738 - GO:0008889(PANTHER)
HCH14g0546 753 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 33 333 - -
HCH14g0546 753 MobiDBLite consensus disorder prediction 710 729 - -
HCH14g0546 753 CDD GDPD_SHV3_repeat_2 351 650 - -
HCH14g0546 753 Gene3D Phosphatidylinositol (PI) phosphodiesterase 349 652 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 Gene3D Phosphatidylinositol (PI) phosphodiesterase 33 334 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 SUPERFAMILY PLC-like phosphodiesterases 35 333 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 Pfam Glycerophosphoryl diester phosphodiesterase family 358 645 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH14g0546 753 CDD GDPD_SHV3_repeat_1 35 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1235 HCH-Chr12:11981400 HCH14g0546 HCH-Chr14:34381414 4.30E-171 dispersed
HCH12g1236 HCH-Chr12:12024364 HCH14g0546 HCH-Chr14:34381414 3.00E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0546 - - - 0.0