Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0550 ATGGCAGCCATGAATCTTCAGCCTGAAGATAACAATACAATACTCATCTCTCAGTTCTATAACCCTGAAGTTTACCCCCTAACGCTACCACAACAAGAATTAGGGGAAGTGAAAAGGCCAAAAAGACGACGCCGGAAGAGTAAAGCGAAAGACGCCGACTCGGCGGTGGGGATGAAGAAGAGGAAGCTGAGCAATGAGCAAGTTAATCTTCTAGAAATGAACTTTGGAAACGAGCACAAATTAGAATCAGAAAGGAAGGATCGTTTGGCTTCAGAACTTGGCCTTGATCCTCGCCAAGTTGCTGTTTGGTTTCAGAACCGTAGGGCTCGTTGGAAGAACAAGAAGTTGGAGCAAGAATACAACACTCTAAAAAACGCTCATGATTCTGTTCTTCTTGAAAAATCTCTCCTTGAATCTGAGATGTCAAAACTGAAAGAACAACTATCGCAAGCGAATGGAGAAATACGAGAGTTATTAGAACGAGGAGACAGAACTTCAAGCAATAGTCCAACATCTTCGATCACGAATAATAATACAATGGATGCAATGAAACCACCATTTATGGGAGAATTGTCTGTGGAAGAATATGAGGACGTGTTCTATTACATGCAAGAGAATGGCTATAATCAAGGAATGGAGTGGCTTAATCTTTATATGTAA 660 41.21 MAAMNLQPEDNNTILISQFYNPEVYPLTLPQQELGEVKRPKRRRRKSKAKDADSAVGMKKRKLSNEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEQEYNTLKNAHDSVLLEKSLLESEMSKLKEQLSQANGEIRELLERGDRTSSNSPTSSITNNNTMDAMKPPFMGELSVEEYEDVFYYMQENGYNQGMEWLNLYM 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34466696 34468322 + evm.model.ptg000014l.658 HCH14g0550 558453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0550 219 Gene3D - 51 122 - -
HCH14g0550 219 SUPERFAMILY Homeodomain-like 59 124 IPR009057 -
HCH14g0550 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 175 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH14g0550 219 FunFam homeobox-leucine zipper protein ATHB-40 53 122 - -
HCH14g0550 219 Coils Coil 106 161 - -
HCH14g0550 219 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677(InterPro)
HCH14g0550 219 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677(InterPro)
HCH14g0550 219 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677(InterPro)
HCH14g0550 219 MobiDBLite consensus disorder prediction 32 62 - -
HCH14g0550 219 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH14g0550 219 SMART HOX_1 57 118 IPR001356 GO:0003677(InterPro)
HCH14g0550 219 CDD homeodomain 59 115 IPR001356 GO:0003677(InterPro)
HCH14g0550 219 MobiDBLite consensus disorder prediction 164 182 - -
HCH14g0550 219 MobiDBLite consensus disorder prediction 160 183 - -
HCH14g0550 219 Pfam Homeodomain 60 113 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1279 HCH-Chr13:40746873 HCH14g0550 HCH-Chr14:34466696 4.30E-49 dispersed
HCH14g0550 HCH-Chr14:34466696 HCH9g0519 HCH-Chr9:3344617 2.20E-19 dispersed
HCH14g0550 HCH-Chr14:34466696 HCH9g0528 HCH-Chr9:3409055 1.90E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32949 PF00046 Homeodomain 9.00E-17 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0550 K09338 - csv:101216890 245.358