Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0552 ATGGGGACAGGAGAAGAGAGCACGCCTTCTAAAACTTCCAAGCCTGCCTCTTCATCTCATGACATACCGACAACGCCTTCATATTCTGATTGGTCAAGCTCAATGCAGGCTTATTACGGTGCTGGTGCTACTCCGCCTCCGTTTTTTGCATCTACAGTTGCCTCTCCAGCTCCCCACCCTTACCTCTGGGGAGGCCAGCATCCTTTTGTTCCACCGTATGGGACACCGGTACCTTACCCAGCTATGTATCCTCCTGGAGGAGTTTATGCACATCCTAGTATGACCATGACTCCTGGCTCTGTACCGGTAACCATGGAATATGAAAGAAAATCTCCTGACGGAAAAGAAAGGCCCTCAAAAAAAACCAAGGGAACTTCTGGGAATACTGGCTCAGGTGGTGGTAGGACTGGGGACAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGCGGCACCGAGGGTTCATCAGAATGTAGTGATGAGCAACAGGAATTTTCTGCAAGTAAGAAGGGAAGCTTTAACCAGATGCTGGCAGATGGGGCCAACGCACAAAGCAATACCGGTGGACCGAACGGTAAATCTTCAGTGACAGGAAAACCAGTTGCGTCCATGCCTGCAGCTAGTCTGAATATGGGAATGGACTTATGGAACACATCCTCTGGTGCCTCGGGGGCTGCAAAGGTGAGAGCCAACGCACCTGCTGTCTCCTCAGCTGTCGTTCCAGCAATGATTGGCCGTGATGGTGTAATGCCCGAACCATGGGTTCAGGATGAACGTGAACTAAAAAGACAGAAAAGAAAGCAATCTAACCGAGAGTCAGCCAGGAGATCAAGATTACGCAAGCAGGCGGAGTGTGAAGATTTACAAGCGAGAGTGCAGACATTGAACAATGAGAACCGCACTCTTAGGGATGAGCTGCAGAGGCTCTCTGAGGAATGCGAGAAGTTAACTTCAGAAAATAGTTCCATCAAGGAAGACTTGACACGATTTTGTGGACCGGAGGCATTAGCTAACCTTGAGAAATGCAGTGGTGCTGCTGCAACAGTTCCCCAGTCTCGTGGCGGTGAGAGTAACAACTAA 1101 49.59 MGTGEESTPSKTSKPASSSHDIPTTPSYSDWSSSMQAYYGAGATPPPFFASTVASPAPHPYLWGGQHPFVPPYGTPVPYPAMYPPGGVYAHPSMTMTPGSVPVTMEYERKSPDGKERPSKKTKGTSGNTGSGGGRTGDSGKVASSSGNDGASQSAESGTEGSSECSDEQQEFSASKKGSFNQMLADGANAQSNTGGPNGKSSVTGKPVASMPAASLNMGMDLWNTSSGASGAAKVRANAPAVSSAVVPAMIGRDGVMPEPWVQDERELKRQKRKQSNRESARRSRLRKQAECEDLQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEDLTRFCGPEALANLEKCSGAAATVPQSRGGESNN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34477955 34480425 + evm.model.ptg000014l.656 HCH14g0552 558455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0552 366 MobiDBLite consensus disorder prediction 108 122 - -
HCH14g0552 366 SMART brlzneu 265 329 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 MobiDBLite consensus disorder prediction 255 290 - -
HCH14g0552 366 Pfam bZIP transcription factor 265 327 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 Coils Coil 278 333 - -
HCH14g0552 366 MobiDBLite consensus disorder prediction 123 205 - -
HCH14g0552 366 FunFam BZIP transcription factor 267 318 - -
HCH14g0552 366 PRINTS cAMP response element binding (CREB) protein signature 215 230 - -
HCH14g0552 366 PRINTS cAMP response element binding (CREB) protein signature 282 302 - -
HCH14g0552 366 PRINTS cAMP response element binding (CREB) protein signature 264 280 - -
HCH14g0552 366 PRINTS cAMP response element binding (CREB) protein signature 302 319 - -
HCH14g0552 366 MobiDBLite consensus disorder prediction 1 30 - -
HCH14g0552 366 MobiDBLite consensus disorder prediction 104 209 - -
HCH14g0552 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 360 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
HCH14g0552 366 CDD bZIP_plant_GBF1 270 320 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 MobiDBLite consensus disorder prediction 219 238 - -
HCH14g0552 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 267 330 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 SUPERFAMILY Leucine zipper domain 268 324 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 Gene3D - 268 325 - -
HCH14g0552 366 Pfam G-box binding protein MFMR 1 94 IPR012900 -
HCH14g0552 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 272 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0552 366 MobiDBLite consensus disorder prediction 259 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0552 HCH-Chr14:34477955 HCH7g1676 HCH-Chr7:48729875 4.80E-27 dispersed
HCH14g0552 HCH-Chr14:34477955 HCH6g1143 HCH-Chr6:45998276 1.10E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32950 PF07777 MFMR 7.60E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0552 K09060 - csv:101217128 576.244