Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0555 ATGCCGGTCGATAAAGAAAATTCCTCTACTGCTACTGCTACTGCTTCAGGGGAAGCTAGCGTCTCCGTTTCTTCCCCTGGAAACGCCGTTCCTCCTATATCTGCTCCTAAGAAAAAGCGAAATCTTCCTGGAATGCCCGATCCGGATGCAGAAGTAATTGCTTTGTCTCCAAAGACCCTTATGGCCACAAATCGATTTGTATGTGAGATTTGCAACAAGGGTTTTCAAAGGGATCAAAATCTTCAGCTTCACCGACGAGGGCATAATCTTCCATGGAAGCTTAGGCAAAGGCCTAGTAAAGAGATAAAGAAGAAGGTTTACGTCTGCCCTGAGACTTCTTGTGTTCATCATGACCCCTCCAGAGCTCTTGGTGACCTCACGGGGATTAAGAAACATTTCTGCAGAAAACATGGTGAGAAGAAATGGAAATGCGATAAATGTTCTAAGAAATATGCCGTTCAATCAGATTGGAAAGCTCATTCCAAAATTTGTGGTACTAGGGAGTATAAATGCGATTGTGGGACCTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAATCTGTGGAAAAACCAGATTTAGATTCTGAACCAAAAGGTCATTCTGAGAAAGTGGTAAAATCGAATTCGGAGTCTTCTATTCCACCTCCATCATCACCCTCACCTCCGACTCCATCTCTTCCTCAGTCAACATGTATGCAATCATCTTTATTGCCGGTTCAGAGTCAAGATCATTCGGAGAATCCACCAAAATATAATGAAGAAGCACCATCCACAACTGGCATGAGTAGTGGGAGCTGCAGCGGTAGCAAGAGCCCAGGCAGCAACAATAGTACAAGAAGTAGTCAATTTGCTAGCTTATTTGCTTCCTCAACTACGTCAATGTGCCTGCAACCTCCTCAACCTCCAGCTTTTACTGACTTAATACAAGCTATGGCTTGTTCAGATCGCCAATCAGATTATGGACCGAGTTCAATTGTCGACCCGGTTTCGCTGGGTCTCTCAACTAGCCACGGGCCATCACTTTTTGGGACTTCTAGCCAAGACCTCCGTCAATATACTCCAACACCACAACCTACGATGTCTGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCGACGACATCCAATGCTACATTGCTTCGTGGTTTGGGCTTAGTATCCTCTTCCTCTTCAACCACGCAACACGAGAGCTTGCCATGGAATCAGAGGCCAGTAGAACCAGATGGCATCTCAATTGCTGCAGGGCTTGGACTAGGGCTTCCATGTGATGGGAACTCTGGGTTGAAGGAATTGATGAGGGGAAATCATTCCATGTTCGCTCCAAAGCATACGACCCTCGATTTCCTTGGACTAGGGATGGCAGCTGGTGGCAGCCCCAGCCGTGGCCTCGCAGCGCTAATCACATCAATCGGCGGTGGTGTAGACATGACCACAACAACTGGATCGTATGGAGGTGGTGATATGTCTGGCAAAGACATGAACAGAAGCAATTGA 1551 46.55 MPVDKENSSTATATASGEASVSVSSPGNAVPPISAPKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSKEIKKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSVEKPDLDSEPKGHSEKVVKSNSESSIPPPSSPSPPTPSLPQSTCMQSSLLPVQSQDHSENPPKYNEEAPSTTGMSSGSCSGSKSPGSNNSTRSSQFASLFASSTTSMCLQPPQPPAFTDLIQAMACSDRQSDYGPSSIVDPVSLGLSTSHGPSLFGTSSQDLRQYTPTPQPTMSATALLQKAAQMGATTSNATLLRGLGLVSSSSSTTQHESLPWNQRPVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPSRGLAALITSIGGGVDMTTTTGSYGGGDMSGKDMNRSN 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34492430 34494721 - evm.model.ptg000014l.653 HCH14g0555 558458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0555 516 MobiDBLite consensus disorder prediction 1 48 - -
HCH14g0555 516 FunFam protein indeterminate-domain 12-like 45 113 - -
HCH14g0555 516 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
HCH14g0555 516 MobiDBLite consensus disorder prediction 196 298 - -
HCH14g0555 516 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
HCH14g0555 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 473 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH14g0555 516 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 141 165 - -
HCH14g0555 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
HCH14g0555 516 SMART c2h2final6 107 137 IPR013087 -
HCH14g0555 516 SMART c2h2final6 142 162 IPR013087 -
HCH14g0555 516 SMART c2h2final6 66 88 IPR013087 -
HCH14g0555 516 Gene3D Classic Zinc Finger 46 116 - -
HCH14g0555 516 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
HCH14g0555 516 MobiDBLite consensus disorder prediction 244 298 - -
HCH14g0555 516 Gene3D Classic Zinc Finger 120 200 - -
HCH14g0555 516 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
HCH14g0555 516 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 168 206 - -
HCH14g0555 516 MobiDBLite consensus disorder prediction 206 222 - -
HCH14g0555 516 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 103 137 - -
HCH14g0555 516 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0273 HCH-Chr11:2485642 HCH14g0555 HCH-Chr14:34492430 8.90E-88 dispersed
HCH13g1282 HCH-Chr13:40802723 HCH14g0555 HCH-Chr14:34492430 4.60E-116 dispersed
HCH14g0555 HCH-Chr14:34492430 HCH6g0106 HCH-Chr6:1325702 2.20E-89 dispersed
HCH14g0555 HCH-Chr14:34492430 HCH9g0599 HCH-Chr9:4017327 2.00E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32951 PF00096 zf-C2H2 0.0052 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0555 K25869 - csv:101217597 732.635