Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0562 ATGGCGAATTTGTGTACGGACACTGGAAATCTAATGGCGATAGCTCAACAAGTTATGAAACAGAAACAGCAGCAAGAGAAAGAGCAACGGGAACAGCTATACCCGCAGTCTCAGCCACCGCAGCAGATTACTGGAACTGGTCCGTGTAATTTTTCTCTCAGCCCATGGAGTGGTTCCGGAGCTCCAGATTTGGGGTTCGGGTTATCCGGAGCGGGATTTGCTGACCCGTTTCTGGTGGCGAGAGGGGTTGATGGTGGAGAAACGAGTTTTCAGTTCCCGAACTTGGAGCATCATTCTGGTGGGTTTAGGTTTTCTGATTTCAGCGGCGGCGCTGCGGCGGAGTTTGATTCTGATGAATGGATGGATAGTTTAATGGCTGGTGGAGATTCAACGGATAGCTCGAATCTGCCTTCTGCTTGTGACACGTGGCATGCTAATACGGATTTTGGTTTCTACGGTCACGATCCTTTCGTACCTTGCCCGAGTCGACTCAGTATTCCTTCTTCTTCACCGTCTGATCTTAACCGAGTGATCTTTTCAGAGCCTCCGAAAAACCAGACCGCGGTTCAACCGGTGGCGGCGGTTTGGACAACTCCTACGCTACCAACTCCACCGCCAGTGGTTAAAGATGACGTCATTGCTGGTCCTTCGATCGAATCGACGCCGCCGATTTTTAGAGTTTTACTTGAATGCGCGAGACTTTCCGATTCCGAGCCGGATCGAGCTGCGAAACTGCTCATTCAATTGAAGGAATCGTCATCGGAGCATGGAGATCCGACGGAGAGAGTGGCGTTTTACTTTCACGAAGCCTTGTGCCGGAGACTATCGAAGCCCTTAGCTTTTGGCGAAACTACTTCTGATGACGATTTCACGATCTCTTATAAAGCTCTCAACGATGCCTGTCCGTACTCTAAATTCGCTCATTTAACGGCGAATCAAGCAATTCTTGAAATTACGGAGAAATCTAGTAAGATTCATATAGTTGATTTTGGAATTACTCAAGGAGTTCAATGGGCGGCTCTTTTACAAGCTCTTGCAACTCGTTCCACCGGAAAACCAACCGGAATTCGGATCTCCGGCATTCCGGCTCCGATGTTAGGGCAATGTACGACGGCGGCTCTGTTTGCTACCGGTAATCGACTCGCTGAGTTCGCGAAGCTTCTGGAACTTGATTTCGAATTCGATCCGATCCTCACTCCGGTTGAAGAGCTAACCGTTTCGAGTTTTCGAATTGATTCCGATGAAACTCTCGCCGTCAATTTCATGCTTCAATTGTACAATCTCTTCGACGAAACGTCTGAGAGAGTAACCAACGTTTTGCATTTGGCGAAATCGCTAAACCCTAAAATCGTAACTCTGGGCGAGTACGAAGCGAGACTGAACCGGGTCGGTTTTTATAACCGGTTCAATAACGCACTGAGGTATTACTCAGCCGTGTTCGAATCACTTGAACCGAAGTTAAACCGTGACTCAACCGAGAGATACCAACTAGAAAAACTTCTACTGGGCCGGCAAATAGCGGCCGTGGTTGGACCAGATTTACCGGGGGTAAAATCGGAAAGAATGGAAGATAAAGAAGAGTGGAAAATTTTAATGGAAAGTTGTGGTTTTGAGAGAGTAAATCTGAGCCATTACGCCAAGAGTCAAGCCAAACTCCTTCTATGGAATTACGATTATAGTTCTTTATATTCTTTAATCGAATCCCCACCTGGGTTTCTCTCGTTGGCATGGAATGAAGTTCCAATTATTACTGTTTCTTCATGGCGTTGA 1770 47.18 MANLCTDTGNLMAIAQQVMKQKQQQEKEQREQLYPQSQPPQQITGTGPCNFSLSPWSGSGAPDLGFGLSGAGFADPFLVARGVDGGETSFQFPNLEHHSGGFRFSDFSGGAAAEFDSDEWMDSLMAGGDSTDSSNLPSACDTWHANTDFGFYGHDPFVPCPSRLSIPSSSPSDLNRVIFSEPPKNQTAVQPVAAVWTTPTLPTPPPVVKDDVIAGPSIESTPPIFRVLLECARLSDSEPDRAAKLLIQLKESSSEHGDPTERVAFYFHEALCRRLSKPLAFGETTSDDDFTISYKALNDACPYSKFAHLTANQAILEITEKSSKIHIVDFGITQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGQCTTAALFATGNRLAEFAKLLELDFEFDPILTPVEELTVSSFRIDSDETLAVNFMLQLYNLFDETSERVTNVLHLAKSLNPKIVTLGEYEARLNRVGFYNRFNNALRYYSAVFESLEPKLNRDSTERYQLEKLLLGRQIAAVVGPDLPGVKSERMEDKEEWKILMESCGFERVNLSHYAKSQAKLLLWNYDYSSLYSLIESPPGFLSLAWNEVPIITVSSWR 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34537490 34539259 + evm.model.ptg000014l.646 HCH14g0562 558465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0562 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 223 588 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH14g0562 589 ProSiteProfiles GRAS family profile. 215 589 IPR005202 -
HCH14g0562 589 MobiDBLite consensus disorder prediction 21 46 - -
HCH14g0562 589 Pfam GRAS domain family 226 589 IPR005202 -
HCH14g0562 589 MobiDBLite consensus disorder prediction 30 46 - -
HCH14g0562 589 Coils Coil 12 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0562 HCH-Chr14:34537490 HCH6g0938 HCH-Chr6:44180497 9.80E-46 dispersed
HCH14g0562 HCH-Chr14:34537490 HCH6g0857 HCH-Chr6:43379011 3.60E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32952 PF03514 GRAS 2.80E-106 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0562 - - - 0.0