Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0577 ATGAATGATTTAATGACAAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAAGCGCGGAGAGATGAAGAAGAAGAAGAAGAAGAAGAAGTTGGTGATATTGAATTAGGTCAAGAACTAAACCCTACTGAAGAACAGAATCTCTCGTTGTTTTTCGAACAAGTCGACGAAATCAAGACCGAGATGGAAGAGATAGCCAATCTCTTGATCGATCTCCAAACCCTAAATCAAGAAGCGAAATCCGTCCACAATGCCAAGATTCTCCGCGGTTTGAGAGATCGAATGGATTCCGACATGGTTTCGATTCTTCGCAAAGCGAATCTCGTTAAAAGAAACCTAGCGTTGCTCGATCAATCCAATGTGAAGAATCGCATGATCTCTGTTGCGTATGGCGAGGGAACGACCGTTGATCGGACGAGGATTTCGATCACGAATGGATTGAGAGTGAAACTGAGGGAAATGATGGATGGTTTTCAGTGTTTGAGGGATAGGGTTTTGATGGATCACAAGGAAGATTTAAGGAGAAGGTATTTTACAGTGACTGGAAATCAACCAAGTGAAGAAGAGATTGATAAGATAATCTCAGGGAGTTTGAAATTGGAATCAATTGGTGGGAAAACAGAAGTTGAATTAGGAGATAGAGTTAGGCATGAGGCTGTGATGGATATTCAAAAGAGTTTGAATAAACTTCATCAAGTTTTTCTTGATATGGCAATCTTGGTTGAAACACAAGGAGAGAAGATTGATGATATTGAAGAGAATGTGGTAAATGCAGGGAGTTTCATCAATGGTGGAACTCATAGTCTTTATTATGCAAATCAGATGAAGAGGAAGAATAAGAAATGGGTGTATTGGGTTTGGGCTGTCATTCTGATTATAATGCTTGTGTGTATTGTTGCAATGTTGGTTTCTTGA 915 39.23 MNDLMTKSFLSYVELKKQARRDEEEEEEEEVGDIELGQELNPTEEQNLSLFFEQVDEIKTEMEEIANLLIDLQTLNQEAKSVHNAKILRGLRDRMDSDMVSILRKANLVKRNLALLDQSNVKNRMISVAYGEGTTVDRTRISITNGLRVKLREMMDGFQCLRDRVLMDHKEDLRRRYFTVTGNQPSEEEIDKIISGSLKLESIGGKTEVELGDRVRHEAVMDIQKSLNKLHQVFLDMAILVETQGEKIDDIEENVVNAGSFINGGTHSLYYANQMKRKNKKWVYWVWAVILIIMLVCIVAMLVS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34619655 34620569 - evm.model.ptg000014l.631 HCH14g0577 558480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0577 304 SMART SynN_4 43 170 IPR006011 GO:0016020(InterPro)
HCH14g0577 304 Coils Coil 55 85 - -
HCH14g0577 304 SMART tSNARE_6 205 272 IPR000727 -
HCH14g0577 304 MobiDBLite consensus disorder prediction 19 39 - -
HCH14g0577 304 FunFam Syntaxin 132 206 303 - -
HCH14g0577 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 216 272 IPR000727 -
HCH14g0577 304 CDD SynN 51 198 IPR006011 GO:0016020(InterPro)
HCH14g0577 304 Gene3D - 208 303 - -
HCH14g0577 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
HCH14g0577 304 PANTHER SYNTAXIN 51 293 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH14g0577 304 CDD SNARE_syntaxin1-like 216 269 - -
HCH14g0577 304 SUPERFAMILY t-snare proteins 47 265 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH14g0577 304 Pfam Syntaxin 51 245 IPR006011 GO:0016020(InterPro)
HCH14g0577 304 Gene3D - 43 176 - -
HCH14g0577 304 Pfam SNARE domain 246 296 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0577 HCH-Chr14:34619655 HCH7g0756 HCH-Chr7:10853149 2.10E-60 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0577 K08486 - csv:101217836 453.751