Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0620 ATGTCTGGTTTTTTTTCTTTAGGCGGAGGTAGCGGTAGCGGTAGCGGTAGAGGAAACGACCACGACCGCGACCACGACAACAACAACCGACACAACGAAATTATACAACCAGACAGTTTGTTTTGGTACAAGGGTAATATTGAACAATGGCAGCAGCAGCAGCAGCAACAGCAAGAACAAGCTCTTTTCCAAACCCAGTCACGTTCCCATCATCATCATCATCATAATCATGATCATCATAATTTTTACTCATCAGCAGCCGTCGGTCTCGGTGTCGGTCAAAGCCGTAACTCAATCAACGTCTCTGATGAATCCTCATCGAGATCGGGTAATTTCATGATGAATATTAGTTCTGGATCAGGTAGTGGGAGTGGAATTAGTTGCCAAGATTGTGGAAACCAAGCTAAGAAAGACTGTATTCATATGCGGTGTAGGACGTGTTGTAAAAGCCGTGGCTTTGATTGTCCAACTCATGTTAAAAGCACTTGGGTTCCCGCTTCTAAACGCCGTGAACGCCAAGAAAAACTCTCCGCCTTACAACAGCTTCAGCTCCGCGGCGGCGACGTCGGCACCGCCGGAGACAATCCTAAACGCCTCAGAGATCATTTAAATCCTATCACTTCTTCTTCTCTTGCCTGCACTCATATACCCATCAACTCTTCTTCAGGGTTGGAAATTGGGAATTTTCCGGCGGAATTGAACTCTCCGGCTGTCTTCCGTTGTGTTCGTGTTAGCGCCGTTGACGATACCGACGATCAATACGCGTATCAGACGGCAGTTAATATAGGAGGACATGTATTCAAGGGAATTCTTTATGATCAAGGTCCTGAAAATAACTACATGCCTAATGATCAAACCTCTTCTGGTGGTGGTGGAAGTAGTGGGATTCAGCCACTTAATTTCATCACCGCCGCCACCGATACCACCACCGTAAGTGGTGGTAATGCGGGTTCATCGGCCTCCGCTTCCGTGGCCACGGCGTTACCCTTACTTGATCCTTCTTTATATTCAACACCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 1068 47.0 MSGFFSLGGGSGSGSGRGNDHDRDHDNNNRHNEIIQPDSLFWYKGNIEQWQQQQQQQQEQALFQTQSRSHHHHHHNHDHHNFYSSAAVGLGVGQSRNSINVSDESSSRSGNFMMNISSGSGSGSGISCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVKSTWVPASKRRERQEKLSALQQLQLRGGDVGTAGDNPKRLRDHLNPITSSSLACTHIPINSSSGLEIGNFPAELNSPAVFRCVRVSAVDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYMPNDQTSSGGGGSSGIQPLNFITAATDTTTVSGGNAGSSASASVATALPLLDPSLYSTPLNSFMAGTQFFLPPRS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34935639 34936992 - evm.model.ptg000014l.588 HCH14g0620 558523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0620 355 MobiDBLite consensus disorder prediction 17 32 - -
HCH14g0620 355 NCBIfam putative zinc finger domain, LRP1 type 127 169 IPR006510 -
HCH14g0620 355 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 349 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
HCH14g0620 355 Pfam Domain of unknown function (DUF702) 125 277 - -
HCH14g0620 355 MobiDBLite consensus disorder prediction 50 80 - -
HCH14g0620 355 MobiDBLite consensus disorder prediction 1 34 - -
HCH14g0620 355 NCBIfam LRP1 C-terminal domain 229 276 IPR006511 -
HCH14g0620 355 MobiDBLite consensus disorder prediction 50 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0620 HCH-Chr14:34935639 HCH8g0394 HCH-Chr8:35636510 2.70E-38 dispersed
HCH12g0159 HCH-Chr12:842367 HCH14g0620 HCH-Chr14:34935639 3.60E-55 wgd
HCH13g1380 HCH-Chr13:41715609 HCH14g0620 HCH-Chr14:34935639 2.20E-59 wgd
HCH14g0620 HCH-Chr14:34935639 HCH4g0767 HCH-Chr4:4938508 4.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32956 PF05142 DUF702 1.90E-66 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0620 K27807 - csv:101207689 367.851