Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0625 ATGGAATGTGTTTCTGCAGATTTTGGGAAAGAAATGAGTCTGAAATCAAACACGCAAGTTTGTTTTGATGATTTTTTGGTGGATGAATTTCTTGACTTTTCTAATGAAGATGCGTTTTTAGAAGAAAACCCAGAACCGGAAATTGAAGAAGACGAAGAAGAAGAAAACAAGGACTTCTCTTCTTCTAATTCTGTTTCCTCGGAAAAAAACGATAACTCAAATCAAAGCTCTGATTCTTCAACCAAAGATGATTTCTGGTCTGTTTCTTCAAGGGATTTTGAAGACCTCGAATGGCTTTCCCATTTCGTTTCCGACCCATTACATGAATATTCCCCACCGCTACCCGGACCCGTTTACGTTTCGCCGGAGCCGGAAATGGGTATTTCTCCGATTCCGTCGAAACCCAGAACAAAACGTCAGAGAATCATTAACAGATTCTGGTCCGTCGGTTCTCATTTCTTTTCCAACACGTCGTCGAGCTCGATTACGTCATCATCGTCATGTTCCTCGCCGTCAAGTCCTTTGGTGTTGTTTCACGCGCTGCCAGCGAAGAAACCGAGGAAGAAACCGGCGGTGGAGGGGGTAACCGGAGTTCAGTCAGTACGGCGGTGCAGTCATTGTGGGGTTCAGAAAACCCCACAGTGGAGAGCCGGTCCGATGGGTTCAAAGACGCTTTGTAACGCATGTGGGGTTCGGTTTAAATCCGGTCGGCTTTTTCCCGAGTACAGACCGGCTTGTAGTCCGACTTTTTCCAATGAATTGCACTCGAATCATCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAAGAGGGATCCGGCGGTGCCTAG 828 46.74 MECVSADFGKEMSLKSNTQVCFDDFLVDEFLDFSNEDAFLEENPEPEIEEDEEEENKDFSSSNSVSSEKNDNSNQSSDSSTKDDFWSVSSRDFEDLEWLSHFVSDPLHEYSPPLPGPVYVSPEPEMGISPIPSKPRTKRQRIINRFWSVGSHFFSNTSSSSITSSSSCSSPSSPLVLFHALPAKKPRKKPAVEGVTGVQSVRRCSHCGVQKTPQWRAGPMGSKTLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEGSGGA 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34968009 34968836 + evm.model.ptg000014l.583 HCH14g0625 558528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0625 275 MobiDBLite consensus disorder prediction 60 84 - -
HCH14g0625 275 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 Gene3D - 198 271 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH14g0625 275 CDD ZnF_GATA 203 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 PANTHER GATA TRANSCRIPTION FACTOR 24 272 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
HCH14g0625 275 MobiDBLite consensus disorder prediction 36 84 - -
HCH14g0625 275 ProSiteProfiles GATA-type zinc finger domain profile. 198 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 PIRSF Txn_fac_GATA_plant 5 274 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH14g0625 275 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 MobiDBLite consensus disorder prediction 36 57 - -
HCH14g0625 275 SMART GATA_3 198 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 261 - -
HCH14g0625 275 FunFam GATA transcription factor 195 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0625 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0625 HCH-Chr14:34968009 HCH4g1427 HCH-Chr4:10471747 2.10E-30 dispersed
HCH13g1375 HCH-Chr13:41652576 HCH14g0625 HCH-Chr14:34968009 9.90E-55 wgd
HCH14g0625 HCH-Chr14:34968009 HCH2g0495 HCH-Chr2:48563247 1.20E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0746 . 33 334 C2C2-Gata Transcription Factor Family AT5G25830 51.4 2.4e-73 272.7
HCH4g0320 . 69 357 C2C2-Gata Transcription Factor Family AT5G25830 51.7 1.4e-65 246.9
HCH13g1375 . 24 292 C2C2-Gata Transcription Factor Family AT3G51080 50.9 6.8e-54 208.0
HCH14g0625 . 92 269 C2C2-Gata Transcription Factor Family AT4G36240 51.9 8.6e-41 164.1
HCH5g0328 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 2.0e-135 479.6
HCH6g1060 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.8 9.9e-127 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32957 PF00320 GATA 2.30E-16 CL0167 HCH TF