Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0625 ATGGAATGTGTTTCTGCAGATTTTGGGAAAGAAATGAGTCTGAAATCAAACACGCAAGTTTGTTTTGATGATTTTTTGGTGGATGAATTTCTTGACTTTTCTAATGAAGATGCGTTTTTAGAAGAAAACCCAGAACCGGAAATTGAAGAAGACGAAGAAGAAGAAAACAAGGACTTCTCTTCTTCTAATTCTGTTTCCTCGGAAAAAAACGATAACTCAAATCAAAGCTCTGATTCTTCAACCAAAGATGATTTCTGGTCTGTTTCTTCAAGGGATTTTGAAGACCTCGAATGGCTTTCCCATTTCGTTTCCGACCCATTACATGAATATTCCCCACCGCTACCCGGACCCGTTTACGTTTCGCCGGAGCCGGAAATGGGTATTTCTCCGATTCCGTCGAAACCCAGAACAAAACGTCAGAGAATCATTAACAGATTCTGGTCCGTCGGTTCTCATTTCTTTTCCAACACGTCGTCGAGCTCGATTACGTCATCATCGTCATGTTCCTCGCCGTCAAGTCCTTTGGTGTTGTTTCACGCGCTGCCAGCGAAGAAACCGAGGAAGAAACCGGCGGTGGAGGGGGTAACCGGAGTTCAGTCAGTACGGCGGTGCAGTCATTGTGGGGTTCAGAAAACCCCACAGTGGAGAGCCGGTCCGATGGGTTCAAAGACGCTTTGTAACGCATGTGGGGTTCGGTTTAAATCCGGTCGGCTTTTTCCCGAGTACAGACCGGCTTGTAGTCCGACTTTTTCCAATGAATTGCACTCGAATCATCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAAGAGGGATCCGGCGGTGCCTAG 828 46.74 MECVSADFGKEMSLKSNTQVCFDDFLVDEFLDFSNEDAFLEENPEPEIEEDEEEENKDFSSSNSVSSEKNDNSNQSSDSSTKDDFWSVSSRDFEDLEWLSHFVSDPLHEYSPPLPGPVYVSPEPEMGISPIPSKPRTKRQRIINRFWSVGSHFFSNTSSSSITSSSSCSSPSSPLVLFHALPAKKPRKKPAVEGVTGVQSVRRCSHCGVQKTPQWRAGPMGSKTLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEGSGGA 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34968009 34968836 + evm.model.ptg000014l.583 HCH14g0625 558528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0625 275 MobiDBLite consensus disorder prediction 60 84 - -
HCH14g0625 275 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 Gene3D - 198 271 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH14g0625 275 CDD ZnF_GATA 203 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 PANTHER GATA TRANSCRIPTION FACTOR 24 272 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
HCH14g0625 275 MobiDBLite consensus disorder prediction 36 84 - -
HCH14g0625 275 ProSiteProfiles GATA-type zinc finger domain profile. 198 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 PIRSF Txn_fac_GATA_plant 5 274 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH14g0625 275 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 MobiDBLite consensus disorder prediction 36 57 - -
HCH14g0625 275 SMART GATA_3 198 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g0625 275 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 261 - -
HCH14g0625 275 FunFam GATA transcription factor 195 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0625 HCH-Chr14:34968009 HCH4g1427 HCH-Chr4:10471747 2.10E-30 dispersed
HCH13g1375 HCH-Chr13:41652576 HCH14g0625 HCH-Chr14:34968009 9.90E-55 wgd
HCH14g0625 HCH-Chr14:34968009 HCH2g0495 HCH-Chr2:48563247 1.20E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32957 PF00320 GATA 2.30E-16 CL0167 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0625 - - - 0.0