Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0625 | ATGGAATGTGTTTCTGCAGATTTTGGGAAAGAAATGAGTCTGAAATCAAACACGCAAGTTTGTTTTGATGATTTTTTGGTGGATGAATTTCTTGACTTTTCTAATGAAGATGCGTTTTTAGAAGAAAACCCAGAACCGGAAATTGAAGAAGACGAAGAAGAAGAAAACAAGGACTTCTCTTCTTCTAATTCTGTTTCCTCGGAAAAAAACGATAACTCAAATCAAAGCTCTGATTCTTCAACCAAAGATGATTTCTGGTCTGTTTCTTCAAGGGATTTTGAAGACCTCGAATGGCTTTCCCATTTCGTTTCCGACCCATTACATGAATATTCCCCACCGCTACCCGGACCCGTTTACGTTTCGCCGGAGCCGGAAATGGGTATTTCTCCGATTCCGTCGAAACCCAGAACAAAACGTCAGAGAATCATTAACAGATTCTGGTCCGTCGGTTCTCATTTCTTTTCCAACACGTCGTCGAGCTCGATTACGTCATCATCGTCATGTTCCTCGCCGTCAAGTCCTTTGGTGTTGTTTCACGCGCTGCCAGCGAAGAAACCGAGGAAGAAACCGGCGGTGGAGGGGGTAACCGGAGTTCAGTCAGTACGGCGGTGCAGTCATTGTGGGGTTCAGAAAACCCCACAGTGGAGAGCCGGTCCGATGGGTTCAAAGACGCTTTGTAACGCATGTGGGGTTCGGTTTAAATCCGGTCGGCTTTTTCCCGAGTACAGACCGGCTTGTAGTCCGACTTTTTCCAATGAATTGCACTCGAATCATCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAAGAGGGATCCGGCGGTGCCTAG | 828 | 46.74 | MECVSADFGKEMSLKSNTQVCFDDFLVDEFLDFSNEDAFLEENPEPEIEEDEEEENKDFSSSNSVSSEKNDNSNQSSDSSTKDDFWSVSSRDFEDLEWLSHFVSDPLHEYSPPLPGPVYVSPEPEMGISPIPSKPRTKRQRIINRFWSVGSHFFSNTSSSSITSSSSCSSPSSPLVLFHALPAKKPRKKPAVEGVTGVQSVRRCSHCGVQKTPQWRAGPMGSKTLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEGSGGA | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 34968009 | 34968836 | + | evm.model.ptg000014l.583 | HCH14g0625 | 558528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0625 | 275 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
HCH14g0625 | 275 | Pfam | GATA zinc finger | 204 | 237 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0625 | 275 | Gene3D | - | 198 | 271 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
HCH14g0625 | 275 | CDD | ZnF_GATA | 203 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0625 | 275 | PANTHER | GATA TRANSCRIPTION FACTOR | 24 | 272 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
HCH14g0625 | 275 | MobiDBLite | consensus disorder prediction | 36 | 84 | - | - | |
HCH14g0625 | 275 | ProSiteProfiles | GATA-type zinc finger domain profile. | 198 | 234 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0625 | 275 | PIRSF | Txn_fac_GATA_plant | 5 | 274 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
HCH14g0625 | 275 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 229 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0625 | 275 | MobiDBLite | consensus disorder prediction | 36 | 57 | - | - | |
HCH14g0625 | 275 | SMART | GATA_3 | 198 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH14g0625 | 275 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 261 | - | - | |
HCH14g0625 | 275 | FunFam | GATA transcription factor | 195 | 274 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0625 | HCH-Chr14:34968009 | HCH4g1427 | HCH-Chr4:10471747 | 2.10E-30 | dispersed | |
HCH13g1375 | HCH-Chr13:41652576 | HCH14g0625 | HCH-Chr14:34968009 | 9.90E-55 | wgd | |
HCH14g0625 | HCH-Chr14:34968009 | HCH2g0495 | HCH-Chr2:48563247 | 1.20E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32957 | PF00320 | GATA | 2.30E-16 | CL0167 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0625 | - | - | - | 0.0 |