Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0629 ATGAGGACACTTTGTGACTCTTGTGAAAGCGCCGAAGCGACTTTGTTTTGCGCCGCCGATGAGGCCGCTCTTTGCCGAGCCTGTGACAAGAAGGTACATATGTGCAATAAACTTGCGAACCGCCATGTGAGAGTCGGGCTCGAAAATCCCGGTGAAGTTCCGCGTTGTGATATATGTGAAAATGCACCAGCTTTCTTCTACTGTGAGATAGATGGAAGTTCCCTTTGTTTACAATGTGATATGAGAATTCATGTAGGAGGTAAAAGAATGCACAGAAGATACCTTCTACTGAGGCAGAGAGTTGAGTTTCCAGGGGATGATACAAATGACATCAAGGACTCAAATCCAGAAAATATGGAACAAACTGAAACAGCAAGAGCCCAAAATCAGCAACTTAAAGTGAAAACAAGTGAGAAGCAGAAAAATCTCAGACTCTCAATTGTTGAAGATCATTCAAATGGAGACGGTCATTCCAAGCGCGGTAATCGAGTGATTGATTTGAATATGAAGCCTCAAACTCATGTAATTCATGAGCAAGCTTCGAATAATCAAAGTTAA 558 42.29 MRTLCDSCESAEATLFCAADEAALCRACDKKVHMCNKLANRHVRVGLENPGEVPRCDICENAPAFFYCEIDGSSLCLQCDMRIHVGGKRMHRRYLLLRQRVEFPGDDTNDIKDSNPENMEQTETARAQNQQLKVKTSEKQKNLRLSIVEDHSNGDGHSKRGNRVIDLNMKPQTHVIHEQASNNQS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34995784 34996600 - evm.model.ptg000014l.579 HCH14g0629 558532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0629 185 Gene3D Classic Zinc Finger 2 93 - -
HCH14g0629 185 CDD Bbox1_BBX-like 56 96 IPR049808 -
HCH14g0629 185 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 MobiDBLite consensus disorder prediction 106 140 - -
HCH14g0629 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 Pfam B-box zinc finger 53 85 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 MobiDBLite consensus disorder prediction 120 136 - -
HCH14g0629 185 CDD Bbox1_BBX-like 4 47 IPR049808 -
HCH14g0629 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 152 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH14g0629 185 FunFam B-box zinc finger protein 19 2 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0629 HCH-Chr14:34995784 HCH7g0529 HCH-Chr7:4055289 1.90E-19 dispersed
HCH12g0156 HCH-Chr12:825143 HCH14g0629 HCH-Chr14:34995784 5.60E-20 wgd
HCH13g1365 HCH-Chr13:41558799 HCH14g0629 HCH-Chr14:34995784 1.90E-64 wgd
HCH14g0629 HCH-Chr14:34995784 HCH4g0768 HCH-Chr4:4955398 1.90E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32958 PF00643 zf-B_box 1.70E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0629 - - - 0.0