Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0629 ATGAGGACACTTTGTGACTCTTGTGAAAGCGCCGAAGCGACTTTGTTTTGCGCCGCCGATGAGGCCGCTCTTTGCCGAGCCTGTGACAAGAAGGTACATATGTGCAATAAACTTGCGAACCGCCATGTGAGAGTCGGGCTCGAAAATCCCGGTGAAGTTCCGCGTTGTGATATATGTGAAAATGCACCAGCTTTCTTCTACTGTGAGATAGATGGAAGTTCCCTTTGTTTACAATGTGATATGAGAATTCATGTAGGAGGTAAAAGAATGCACAGAAGATACCTTCTACTGAGGCAGAGAGTTGAGTTTCCAGGGGATGATACAAATGACATCAAGGACTCAAATCCAGAAAATATGGAACAAACTGAAACAGCAAGAGCCCAAAATCAGCAACTTAAAGTGAAAACAAGTGAGAAGCAGAAAAATCTCAGACTCTCAATTGTTGAAGATCATTCAAATGGAGACGGTCATTCCAAGCGCGGTAATCGAGTGATTGATTTGAATATGAAGCCTCAAACTCATGTAATTCATGAGCAAGCTTCGAATAATCAAAGTTAA 558 42.29 MRTLCDSCESAEATLFCAADEAALCRACDKKVHMCNKLANRHVRVGLENPGEVPRCDICENAPAFFYCEIDGSSLCLQCDMRIHVGGKRMHRRYLLLRQRVEFPGDDTNDIKDSNPENMEQTETARAQNQQLKVKTSEKQKNLRLSIVEDHSNGDGHSKRGNRVIDLNMKPQTHVIHEQASNNQS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 34995784 34996600 - evm.model.ptg000014l.579 HCH14g0629 558532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0629 185 Gene3D Classic Zinc Finger 2 93 - -
HCH14g0629 185 CDD Bbox1_BBX-like 56 96 IPR049808 -
HCH14g0629 185 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 MobiDBLite consensus disorder prediction 106 140 - -
HCH14g0629 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 Pfam B-box zinc finger 53 85 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270(InterPro)
HCH14g0629 185 MobiDBLite consensus disorder prediction 120 136 - -
HCH14g0629 185 CDD Bbox1_BBX-like 4 47 IPR049808 -
HCH14g0629 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 152 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH14g0629 185 FunFam B-box zinc finger protein 19 2 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0629 HCH-Chr14:34995784 HCH7g0529 HCH-Chr7:4055289 1.90E-19 dispersed
HCH12g0156 HCH-Chr12:825143 HCH14g0629 HCH-Chr14:34995784 5.60E-20 wgd
HCH13g1365 HCH-Chr13:41558799 HCH14g0629 HCH-Chr14:34995784 1.90E-64 wgd
HCH14g0629 HCH-Chr14:34995784 HCH4g0768 HCH-Chr4:4955398 1.90E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32958 PF00643 zf-B_box 1.70E-06 No_clan HCH TF