Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0647 ATGGAACAGTGGAAAACTGGAGATTTCTCTCAATCTCTTCACTCTCTTTCCGCTCCCTCAATTCGTCCCCACAGTCAGCAACTTCTTGATTCCAGGTTAAGAAGACCCGATGTGGAAGGAAAAGATCCAATTGTTGTGAGAAAAATTCAGAAGGCCGATCGTGAAAAATTGAGGAGAGATAGATTGAATGAACACTTTCTTGAACTAGGAAACACATTAGACCCAGATAGGCCGAAGAATGATAAGGCAACTATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAACAGATTAAAGACTGACTATGAAGTTCTGTCTGAAGAATCACGTGAGCTAACCCAAGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATCGAGAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTTATGTTTCCCTGGGCTACAATGGATCCATCTGTTGTTATGGGTCCCCCATATTCATACCCGGTTCCTGTTCCTGTCCCTCCTGGCCCGATTTCCATGCATCCATCATTGCAGCCTTTCACTTTCTTTGGAAATCAGAATCCTGGTGCCATTCCTAATCCATGTTCAACATTTGTCCCATATACTGCTGCTGCCAATCATCCAGTCGAACAGCCTTCAGCTCAATACGCATCCAACTCACATATTTCTAGCAAACAAGATTCCAAAAGTAAGTCATCCGATCAGCATAGGCGAAGTAATGTGGAAAGATGTGATGAATCTAATGATGTGGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAGCACAACAGGATGCCTCCTCTGGGAGTAAGAAGGGTAAGCAATCGCAGAGGAAAGAAAAAAATGTTACAGATTGTAGTTCTTCTAGTAGGTTTTCTTCATCCCAAGTTCATCAAGATAGTTCTTCTAATAGCGTTGGGGATGTGCCAAAACTGAACAACTGA 969 42.11 MEQWKTGDFSQSLHSLSAPSIRPHSQQLLDSRLRRPDVEGKDPIVVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKTDYEVLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPISMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPVEQPSAQYASNSHISSKQDSKSKSSDQHRRSNVERCDESNDVATDLELKMPGSSAQQDASSGSKKGKQSQRKEKNVTDCSSSSRFSSSQVHQDSSSNSVGDVPKLNN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35147169 35149848 - evm.model.ptg000014l.561 HCH14g0647 558550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0647 322 CDD bHLH_AtILR3_like 51 125 - -
HCH14g0647 322 MobiDBLite consensus disorder prediction 265 279 - -
HCH14g0647 322 MobiDBLite consensus disorder prediction 220 322 - -
HCH14g0647 322 MobiDBLite consensus disorder prediction 234 259 - -
HCH14g0647 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983(InterPro)
HCH14g0647 322 MobiDBLite consensus disorder prediction 294 322 - -
HCH14g0647 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 116 IPR036638 GO:0046983(InterPro)
HCH14g0647 322 MobiDBLite consensus disorder prediction 1 27 - -
HCH14g0647 322 Coils Coil 86 141 - -
HCH14g0647 322 Pfam Helix-loop-helix DNA-binding domain 47 97 IPR011598 GO:0046983(InterPro)
HCH14g0647 322 SMART finulus 52 102 IPR011598 GO:0046983(InterPro)
HCH14g0647 322 Gene3D - 46 129 IPR036638 GO:0046983(InterPro)
HCH14g0647 322 PANTHER TRANSCRIPTION FACTOR BHLH121 26 319 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
HCH14g0647 322 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0647 HCH-Chr14:35147169 HCH2g0758 HCH-Chr2:51219664 1.60E-10 dispersed
HCH8g1308 HCH-Chr8:48114701 HCH14g0647 HCH-Chr14:35147169 7.90E-08 transposed
HCH14g0647 HCH-Chr14:35147169 HCH2g0520 HCH-Chr2:48903348 1.10E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32961 PF00010 HLH 6.00E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0647 - - - 0.0