Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0647 | ATGGAACAGTGGAAAACTGGAGATTTCTCTCAATCTCTTCACTCTCTTTCCGCTCCCTCAATTCGTCCCCACAGTCAGCAACTTCTTGATTCCAGGTTAAGAAGACCCGATGTGGAAGGAAAAGATCCAATTGTTGTGAGAAAAATTCAGAAGGCCGATCGTGAAAAATTGAGGAGAGATAGATTGAATGAACACTTTCTTGAACTAGGAAACACATTAGACCCAGATAGGCCGAAGAATGATAAGGCAACTATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAACAGATTAAAGACTGACTATGAAGTTCTGTCTGAAGAATCACGTGAGCTAACCCAAGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATCGAGAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTTATGTTTCCCTGGGCTACAATGGATCCATCTGTTGTTATGGGTCCCCCATATTCATACCCGGTTCCTGTTCCTGTCCCTCCTGGCCCGATTTCCATGCATCCATCATTGCAGCCTTTCACTTTCTTTGGAAATCAGAATCCTGGTGCCATTCCTAATCCATGTTCAACATTTGTCCCATATACTGCTGCTGCCAATCATCCAGTCGAACAGCCTTCAGCTCAATACGCATCCAACTCACATATTTCTAGCAAACAAGATTCCAAAAGTAAGTCATCCGATCAGCATAGGCGAAGTAATGTGGAAAGATGTGATGAATCTAATGATGTGGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAGCACAACAGGATGCCTCCTCTGGGAGTAAGAAGGGTAAGCAATCGCAGAGGAAAGAAAAAAATGTTACAGATTGTAGTTCTTCTAGTAGGTTTTCTTCATCCCAAGTTCATCAAGATAGTTCTTCTAATAGCGTTGGGGATGTGCCAAAACTGAACAACTGA | 969 | 42.11 | MEQWKTGDFSQSLHSLSAPSIRPHSQQLLDSRLRRPDVEGKDPIVVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKTDYEVLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPISMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPVEQPSAQYASNSHISSKQDSKSKSSDQHRRSNVERCDESNDVATDLELKMPGSSAQQDASSGSKKGKQSQRKEKNVTDCSSSSRFSSSQVHQDSSSNSVGDVPKLNN | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 35147169 | 35149848 | - | evm.model.ptg000014l.561 | HCH14g0647 | 558550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0647 | 322 | CDD | bHLH_AtILR3_like | 51 | 125 | - | - | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 265 | 279 | - | - | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 220 | 322 | - | - | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 234 | 259 | - | - | |
HCH14g0647 | 322 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 46 | 96 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 294 | 322 | - | - | |
HCH14g0647 | 322 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 116 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
HCH14g0647 | 322 | Coils | Coil | 86 | 141 | - | - | |
HCH14g0647 | 322 | Pfam | Helix-loop-helix DNA-binding domain | 47 | 97 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0647 | 322 | SMART | finulus | 52 | 102 | IPR011598 | GO:0046983(InterPro) | |
HCH14g0647 | 322 | Gene3D | - | 46 | 129 | IPR036638 | GO:0046983(InterPro) | |
HCH14g0647 | 322 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 26 | 319 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
HCH14g0647 | 322 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0647 | HCH-Chr14:35147169 | HCH2g0758 | HCH-Chr2:51219664 | 1.60E-10 | dispersed | |
HCH8g1308 | HCH-Chr8:48114701 | HCH14g0647 | HCH-Chr14:35147169 | 7.90E-08 | transposed | |
HCH14g0647 | HCH-Chr14:35147169 | HCH2g0520 | HCH-Chr2:48903348 | 1.10E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32961 | PF00010 | HLH | 6.00E-09 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0647 | - | - | - | 0.0 |