Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0689 ATGAGTTTCTGCAACAACCAGGACTTGGATCTAGCATCTCCATATTGGAACAACAAGGCTGACAATGCATGGCAACTAACAGCAACTACCATGGTCGGCCTCCAAAGTGTTCCTGGTCTAGTAATTCTCTATGGCAGCATGGTTAAAAAGAAATGGGCTGTCAACTCTGCCTTCATGGCCCTTTATGGCTTCTCCGCCGTCCTCGTTTGCTGGGTACTTTGGGCTCATCGTATGGCATTCGGCGACTCTTCGGCGATTAAACTCGTCGGTAAGCCCGGGGCAGCGCTGTCTGAAAGGTACCTTCTTTCAAAGTCTCCCCAAGGCTGTTTTCCAATGGCTGACTACGTGTTTTTCCAGTTTGCTTTCGCCGCCATTACCGTCGTCTTGCTCGCCGGTTCTTTGCTCGGGAGGATGAATTTCTTTGCGTGGATGCTGTTTGTTCCAATGTGGTTAACATTTTGTTACACTGTTGGAGCTTTCAGTATATGGGGAAATGGATTCCTTGACAAGTATATTATTGACTATGCAGGCGGCTATGTGATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCGAGACACTCCCAAGACAGGCAAAACTTCCCACCAAACAACATCATGCACATGGTGGGAGGCGTGGGGTTTCTTTGGCTCGGTTGGACCGGGTTCAACGGTGGAGCTCCGTTTTCAGCAGGTCGGATTACGTCGCTAGCCATTTTGAACACACATGTCTGCACGGCCACAAGTCTCTTGATATGGGTTTCAATGGATATCATTGTATACAAGAAAAGTTCAGTCATTGGTGCAGTTCAAGGGATCATCACCGGCCTCGTCTGCATCACTCCTGGCGCAGGGCTTGTGGATCCAGTAGCAGCCTTGGTAATGGGAGCGCTGGCCGGTATGGTTCCATGGTACACCATGATGGTCCTGCACAGGAAGCTATCATTCCTTCAGCGAGTAGACGATACACTGGGGGTCTTCCATACACATGCAGTGGCTGGTTCTATGGGCGGACTCCTCACAGGCCTCTTTGCTAAACCCAACCTTCTGAGAATAATGTACCCAAATTATGAATATGGTCCTGGCTTCCTGTACTCCTTCTCTGATAGAAACCTCAAAGATGGGCTCAAACAAATCGCTTATCAGTTTGCTGGAGCAGTTTTCATTACTCTTTGGAACGCCGTTTTCACCAGCATTATCTGTTACCTGATCAGCCGAATTGTTAATTTAAGGATGAAAGAAGAGGACCTTGAGATTGGCGACGATGCAGCTCATGGAGAAGAACCCTATGCGCTTTGGGGTGACGGGGAGAGGATGCCAAGCTCATTTCGTGTACCAAGGACCCCCAGATTTCCTTCATTATGCAGATGGGATTAA 1395 48.89 MSFCNNQDLDLASPYWNNKADNAWQLTATTMVGLQSVPGLVILYGSMVKKKWAVNSAFMALYGFSAVLVCWVLWAHRMAFGDSSAIKLVGKPGAALSERYLLSKSPQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFFAWMLFVPMWLTFCYTVGAFSIWGNGFLDKYIIDYAGGYVIHLSSGVAGFTAAYWVGPRHSQDRQNFPPNNIMHMVGGVGFLWLGWTGFNGGAPFSAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDPVAALVMGALAGMVPWYTMMVLHRKLSFLQRVDDTLGVFHTHAVAGSMGGLLTGLFAKPNLLRIMYPNYEYGPGFLYSFSDRNLKDGLKQIAYQFAGAVFITLWNAVFTSIICYLISRIVNLRMKEEDLEIGDDAAHGEEPYALWGDGERMPSSFRVPRTPRFPSLCRWD 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35367082 35368707 - evm.model.ptg000014l.519 HCH14g0689 558592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0689 464 PRINTS Rhesus blood group protein signature 119 135 IPR002229 GO:0005886(InterPro)
HCH14g0689 464 PRINTS Rhesus blood group protein signature 244 266 IPR002229 GO:0005886(InterPro)
HCH14g0689 464 PRINTS Rhesus blood group protein signature 299 317 IPR002229 GO:0005886(InterPro)
HCH14g0689 464 PRINTS Rhesus blood group protein signature 213 231 IPR002229 GO:0005886(InterPro)
HCH14g0689 464 ProSitePatterns Ammonium transporters signature. 174 199 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH14g0689 464 Gene3D Ammonium transporter AmtB like domains 2 439 IPR029020 -
HCH14g0689 464 NCBIfam ammonium transporter 21 436 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH14g0689 464 PANTHER AMMONIUM TRANSPORTER MEP2 16 446 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
HCH14g0689 464 Pfam Ammonium Transporter Family 23 436 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH14g0689 464 SUPERFAMILY Ammonium transporter 16 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0689 HCH-Chr14:35367082 HCH4g0415 HCH-Chr4:2704473 5.20E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0689 K03320 - csv:101218977 842.032