Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0714 ATGAGTTGTAGATCAAATGAAGAACCAACATCTAGTTTTCCCAGGGGAAAATCATGTCAACCAAGAAATTTGCCTATACTTGATCAGGACCTCAATTTCCTTCCGTGTTCAGTTGTTGTATCTGAAGAATCCAATAATCAAATGGAAGAACTTTGTGAACCAGTTATTGTAGAAAAGAAAAGGAGGGCAACAAGTGAGCAAATTGCCAGAATTTCTTTATCAGACCTGGAGAAGTACTTTGATCTTCCAATTACAGAAGCTTCAAGAAATCTAAATGTGGGATTGACAGTACTGAAAAGGAAATGTAGAGAGTTCGGCATTCATCGGTGGCCACATAGGAAGATCAAATCCCTCGATGGTCTCATCCGAGATCTTCAGGAAGAAGCAGAGCATTGGAAAGAAGATCACAAGGCTTTGATGGCAGTGACGATAAGGCAGAGGATGTTGGAAAAAGAACGAGAGAGCATTGAGAAGACACCATTCAGAGATCTGGAGAGTGAGACCAAGAAATTTAGGCAAGATGTTTTCAAGAGAAGGCACAAGGCTAGGGCTTTAGAAAGCCAGGGTCTATAA 573 40.84 MSCRSNEEPTSSFPRGKSCQPRNLPILDQDLNFLPCSVVVSEESNNQMEELCEPVIVEKKRRATSEQIARISLSDLEKYFDLPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSLDGLIRDLQEEAEHWKEDHKALMAVTIRQRMLEKERESIEKTPFRDLESETKKFRQDVFKRRHKARALESQGL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35555870 35556637 - evm.model.ptg000014l.494 HCH14g0714 558617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0714 190 Coils Coil 115 142 - -
HCH14g0714 190 Pfam RWP-RK domain 71 118 IPR003035 -
HCH14g0714 190 MobiDBLite consensus disorder prediction 1 18 - -
HCH14g0714 190 PANTHER PROTEIN RKD4 5 187 IPR044607 GO:0003700(InterPro)
HCH14g0714 190 MobiDBLite consensus disorder prediction 1 21 - -
HCH14g0714 190 ProSiteProfiles RWP-RK domain profile. 53 138 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0714 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0714 HCH-Chr14:35555870 HCH8g1300 HCH-Chr8:48060803 5.10E-20 dispersed
HCH14g0714 HCH-Chr14:35555870 HCH4g0513 HCH-Chr4:3387930 6.20E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1300 . 73 258 AtRKD Transcription Factor Family AT1G18790 58.8 8.5e-45 177.6
HCH14g0714 . 20 182 AtRKD Transcription Factor Family AT4G35590 53.4 3.5e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32963 PF02042 RWP-RK 8.50E-23 No_clan HCH TF