Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0714 ATGAGTTGTAGATCAAATGAAGAACCAACATCTAGTTTTCCCAGGGGAAAATCATGTCAACCAAGAAATTTGCCTATACTTGATCAGGACCTCAATTTCCTTCCGTGTTCAGTTGTTGTATCTGAAGAATCCAATAATCAAATGGAAGAACTTTGTGAACCAGTTATTGTAGAAAAGAAAAGGAGGGCAACAAGTGAGCAAATTGCCAGAATTTCTTTATCAGACCTGGAGAAGTACTTTGATCTTCCAATTACAGAAGCTTCAAGAAATCTAAATGTGGGATTGACAGTACTGAAAAGGAAATGTAGAGAGTTCGGCATTCATCGGTGGCCACATAGGAAGATCAAATCCCTCGATGGTCTCATCCGAGATCTTCAGGAAGAAGCAGAGCATTGGAAAGAAGATCACAAGGCTTTGATGGCAGTGACGATAAGGCAGAGGATGTTGGAAAAAGAACGAGAGAGCATTGAGAAGACACCATTCAGAGATCTGGAGAGTGAGACCAAGAAATTTAGGCAAGATGTTTTCAAGAGAAGGCACAAGGCTAGGGCTTTAGAAAGCCAGGGTCTATAA 573 40.84 MSCRSNEEPTSSFPRGKSCQPRNLPILDQDLNFLPCSVVVSEESNNQMEELCEPVIVEKKRRATSEQIARISLSDLEKYFDLPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSLDGLIRDLQEEAEHWKEDHKALMAVTIRQRMLEKERESIEKTPFRDLESETKKFRQDVFKRRHKARALESQGL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35555870 35556637 - evm.model.ptg000014l.494 HCH14g0714 558617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0714 190 Coils Coil 115 142 - -
HCH14g0714 190 Pfam RWP-RK domain 71 118 IPR003035 -
HCH14g0714 190 MobiDBLite consensus disorder prediction 1 18 - -
HCH14g0714 190 PANTHER PROTEIN RKD4 5 187 IPR044607 GO:0003700(InterPro)
HCH14g0714 190 MobiDBLite consensus disorder prediction 1 21 - -
HCH14g0714 190 ProSiteProfiles RWP-RK domain profile. 53 138 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0714 HCH-Chr14:35555870 HCH8g1300 HCH-Chr8:48060803 5.10E-20 dispersed
HCH14g0714 HCH-Chr14:35555870 HCH4g0513 HCH-Chr4:3387930 6.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32963 PF02042 RWP-RK 8.50E-23 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0714 - - - 0.0