Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0718 | ATGAGTTTTGTTTGCATTCTATTGTTGATGTTATTCTTCAATGGGAGCTCCTCAAATGGTGATAGCACAAATGCATCCACAAGACCTGGTGCTGTCAAAATTGGGGCTTTATTCTCTTTCAAGTCTATGATAGGTAGAGTTGCAAAAGTCGCCGTTGAAGCTGCCGTCCAAGATGTGAATTCTGATCCATCTGTTCTCGGGGGAACGACACTGGAACTCGCGTTTCATGATACTAATTACAGTGGATTTTTGGGAATCATTGAGTCCTTACGTTTCATGGAGACCGAGACGATGGCCATAATTGGCCCCCAAAATTCTGTAACTGCACATGTGATATCTCATATTGCAAATGAGCTCCAAGTCCCACTATTGTCTTTTTCAGCTACAGACCCCACACTTTCTTCACTTCAGTTTCCTTTCTTTCTTAGAACTTCACAGAATGATCTGTTTCAGATGGCTGCAGTAGCTGAAATAGTTGATTACTATGACTGGAGAGAGGTAATTGCTATCTTTGTTGATGATGACCACGGTAGAAATGGTATTGCTGCATTAGGTGATAAACTTAATGAGAAACGTTGTAAGATCTCATTTAAAGTACCATTGAGACCTGATGCAAGCCGTGATGAGGTCACTGATGCACTTGTGAAGGTTAGTTTTACGGAGTCTCGGATACTCATCGTTCACACTTATGAGACGACTGGTATGGTGGTCCTTGATGTGGCTCAATATCTTGGATTGACTGGAGCTGGGTATGTGTGGATAGCCACTAACTGGCTCTCTTCTCTACTCGACACGAATTCTCCTCTCCCTTCTGATTCCATTGAACATATTCAAGGAGTAATTACCCTGCGTATCTACACTCCAGATTCTGCACTCAAGAGAAACTTTGTTTCAAGGTGGACCAACTTGACTAGTGAAAAATCAACTAGTGGGCCTCGTGGATTGAGTACTTTCGGATTACATGCCTACGATACCGTTTGGTTGCTTGCTCATGCAATAAACGCATTTCTTAATGAAGGGGGAAATCTCTCATTTTCAAATCACTCAAAGTTATCCGGGGCATACGATGGAACTCTGAATCTTAATTCTATGAGCATCTTTGATGGTGGGAAGTTACTAGTGAACAAAATCTTAGAAGCGAAATTTACTGGAATAACAGGCTTGGTTGAGTTTACTTCAGATAGGAACCTAGTTCGTCCAGCATTCGAAGTAATCAATATAATTGGCACGGGAGTTAGGAGAATTGGTTATTGGTCTAATTATTCAGGTCTATCAATATTGCCTCCTGAAATACTGTACTCGAAACCGCCTAATCGTTCCAGTTCAAATCAAAAGCTGCACGATGTAGTATGGCCTGGACAGGCAACACAGAAACCTCGTGGGTGGGCATTTCCGAGCAGTGGAAGACATTTGAGAATTGGAGTCCCAAAACGAGTGAGTTATCAAGAATTTGTCTCACAGGTAGAAGGCACTGACATGTTCACTGGTTACTGCGTTGATGTCTTCACTGCAGCATCCAACTTGTTGCCTTATGCGGTCCCGTATAAGTTAATATCATATGGAGATGGCCATTCAAATCCAAGCGGCACTGAGCTTATTCGTTTAATAACAGCAGGGGTCTTTGATGCAGCTATAGGTGATATTGCAATAATCACCAATCGGACACGGATGGCAGATTTTACGCAACCATTCATCGAGTCTGGCTTGGTAGTTGTAGCCCCCGTCAGGAAGTCGAATTCGAGTGCTTGGGCTTTTTTACAGCCATTCACTCCAAAGATGTGGTGTGTTACTGCTGTTTCTTTTCTCATAGTAGGAGCAGTCATTTGGATTTTGGAGCATAGGATGAATGACGAATTCCGAGGTCCTCCCAAGAGACAAGTTATCACTATGCTATGGTTCAGCTTTTCAACTCTATTCTTTTCCCATAGGGAAAACACAGTCAGTAGCCTCGGTCGCCTGGTGTTAATCATATGGTTATTTGTTGTTCTCATTATCAACTCAAGCTACACAGCAAGCTTGACCTCTATCCTTACAGTGCAACAACTTTACTCTACCGTTAAAGGGATCGAAACCCTGGTTTCGAGCGATGATCCAATTGGCTACCAGCAGGGCTCATTTGCTCGAAATTACTTGATCGAGGAACTTGGCATCCATGAGTCCAGACTTGTTCCACTCATCTCAGCAGAAGACTATGTCAAAGCCTTGAACGATGGTCCAAAGAATCACGGTGTTGCTGCCATTATTGACGAGCGCGCATATGTTGAACTCTTCCTATCAACGCATTGTGAATACAGTATTATTGGTCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGGGACTCCCCTTTGGCAGTTGACATGTCCACAGCCATTCTGAAACTGTCTGAAAATGGTGATCTTCAAAGAATCCACGATAAATGGCTGATGAAAAGTGCCTGCACTTCACCAACCTCCAAAATTGAGGTGGACCGGCTTCAACTCAAGAGTTTTTGGGGACTTTTTCTAATGAGTGGTTTAGCCTGCTTGCTTGCTCTGTTGATATACCTCTTTCTAATGCTGCGCCAGTACAGCAAGCATTACTCTGAAGACGAGTCTACCGTGCGCAGCACTCGTTCTGCAAGCCTACAGAGGTTTCTTTCTTTTGCAGATGAAAAGGAAGAGGTAATCGAAAGCCGATCCAAGAGAAGACAGATGGAGATGGGATCGATTCGGAGCATGGGTGAAGAAAATTCCATCGGCAGTTCCAGGACACTTTCTCATGGTGATGCTGCCGGTGTTGATGCATGA | 2796 | 43.53 | MSFVCILLLMLFFNGSSSNGDSTNASTRPGAVKIGALFSFKSMIGRVAKVAVEAAVQDVNSDPSVLGGTTLELAFHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFLRTSQNDLFQMAAVAEIVDYYDWREVIAIFVDDDHGRNGIAALGDKLNEKRCKISFKVPLRPDASRDEVTDALVKVSFTESRILIVHTYETTGMVVLDVAQYLGLTGAGYVWIATNWLSSLLDTNSPLPSDSIEHIQGVITLRIYTPDSALKRNFVSRWTNLTSEKSTSGPRGLSTFGLHAYDTVWLLAHAINAFLNEGGNLSFSNHSKLSGAYDGTLNLNSMSIFDGGKLLVNKILEAKFTGITGLVEFTSDRNLVRPAFEVINIIGTGVRRIGYWSNYSGLSILPPEILYSKPPNRSSSNQKLHDVVWPGQATQKPRGWAFPSSGRHLRIGVPKRVSYQEFVSQVEGTDMFTGYCVDVFTAASNLLPYAVPYKLISYGDGHSNPSGTELIRLITAGVFDAAIGDIAIITNRTRMADFTQPFIESGLVVVAPVRKSNSSAWAFLQPFTPKMWCVTAVSFLIVGAVIWILEHRMNDEFRGPPKRQVITMLWFSFSTLFFSHRENTVSSLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSTVKGIETLVSSDDPIGYQQGSFARNYLIEELGIHESRLVPLISAEDYVKALNDGPKNHGVAAIIDERAYVELFLSTHCEYSIIGQEFTKNGWGFAFQRDSPLAVDMSTAILKLSENGDLQRIHDKWLMKSACTSPTSKIEVDRLQLKSFWGLFLMSGLACLLALLIYLFLMLRQYSKHYSEDESTVRSTRSASLQRFLSFADEKEEVIESRSKRRQMEMGSIRSMGEENSIGSSRTLSHGDAAGVDA | 931 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 35570764 | 35574375 | + | evm.model.ptg000014l.490 | HCH14g0718 | 558621 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0718 | 931 | Pfam | Receptor family ligand binding region | 49 | 409 | IPR001828 | - | |
HCH14g0718 | 931 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 32 | 885 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
HCH14g0718 | 931 | FunFam | Glutamate receptor | 147 | 304 | - | - | |
HCH14g0718 | 931 | PIRSF | IGluLR_plant | 1 | 926 | IPR017103 | - | |
HCH14g0718 | 931 | SUPERFAMILY | Periplasmic binding protein-like II | 449 | 814 | - | - | |
HCH14g0718 | 931 | SUPERFAMILY | Periplasmic binding protein-like I | 26 | 463 | IPR028082 | - | |
HCH14g0718 | 931 | CDD | PBP1_GABAb_receptor_plant | 33 | 425 | IPR044440 | - | |
HCH14g0718 | 931 | Gene3D | - | 50 | 399 | - | - | |
HCH14g0718 | 931 | Gene3D | - | 582 | 701 | - | - | |
HCH14g0718 | 931 | FunFam | Glutamate receptor | 708 | 815 | - | - | |
HCH14g0718 | 931 | FunFam | Glutamate receptor | 466 | 582 | - | - | |
HCH14g0718 | 931 | Gene3D | - | 774 | 810 | - | - | |
HCH14g0718 | 931 | CDD | GluR_Plant | 471 | 811 | - | - | |
HCH14g0718 | 931 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 45 | 61 | - | - | |
HCH14g0718 | 931 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 105 | 133 | - | - | |
HCH14g0718 | 931 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 322 | 334 | - | - | |
HCH14g0718 | 931 | Gene3D | - | 147 | 424 | - | - | |
HCH14g0718 | 931 | Gene3D | - | 466 | 581 | - | - | |
HCH14g0718 | 931 | SMART | GluR_14 | 470 | 813 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH14g0718 | 931 | Pfam | Ligand-gated ion channel | 592 | 844 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH14g0718 | 931 | FunFam | Glutamate receptor | 582 | 712 | - | - | |
HCH14g0718 | 931 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 486 | 573 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH14g0718 | 931 | Gene3D | - | 742 | 773 | - | - | |
HCH14g0718 | 931 | MobiDBLite | consensus disorder prediction | 893 | 931 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0047 | HCH-Chr12:243662 | HCH14g0718 | HCH-Chr14:35570764 | 0.00E+00 | dispersed | |
HCH14g0718 | HCH-Chr14:35570764 | HCH2g0742 | HCH-Chr2:51087788 | 1.20E-292 | dispersed | |
HCH14g0718 | HCH-Chr14:35570764 | HCH7g0393 | HCH-Chr7:2827069 | 3.70E-281 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0718 | K05387 | - | csv:101213408 | 1511.89 |