Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0718 ATGAGTTTTGTTTGCATTCTATTGTTGATGTTATTCTTCAATGGGAGCTCCTCAAATGGTGATAGCACAAATGCATCCACAAGACCTGGTGCTGTCAAAATTGGGGCTTTATTCTCTTTCAAGTCTATGATAGGTAGAGTTGCAAAAGTCGCCGTTGAAGCTGCCGTCCAAGATGTGAATTCTGATCCATCTGTTCTCGGGGGAACGACACTGGAACTCGCGTTTCATGATACTAATTACAGTGGATTTTTGGGAATCATTGAGTCCTTACGTTTCATGGAGACCGAGACGATGGCCATAATTGGCCCCCAAAATTCTGTAACTGCACATGTGATATCTCATATTGCAAATGAGCTCCAAGTCCCACTATTGTCTTTTTCAGCTACAGACCCCACACTTTCTTCACTTCAGTTTCCTTTCTTTCTTAGAACTTCACAGAATGATCTGTTTCAGATGGCTGCAGTAGCTGAAATAGTTGATTACTATGACTGGAGAGAGGTAATTGCTATCTTTGTTGATGATGACCACGGTAGAAATGGTATTGCTGCATTAGGTGATAAACTTAATGAGAAACGTTGTAAGATCTCATTTAAAGTACCATTGAGACCTGATGCAAGCCGTGATGAGGTCACTGATGCACTTGTGAAGGTTAGTTTTACGGAGTCTCGGATACTCATCGTTCACACTTATGAGACGACTGGTATGGTGGTCCTTGATGTGGCTCAATATCTTGGATTGACTGGAGCTGGGTATGTGTGGATAGCCACTAACTGGCTCTCTTCTCTACTCGACACGAATTCTCCTCTCCCTTCTGATTCCATTGAACATATTCAAGGAGTAATTACCCTGCGTATCTACACTCCAGATTCTGCACTCAAGAGAAACTTTGTTTCAAGGTGGACCAACTTGACTAGTGAAAAATCAACTAGTGGGCCTCGTGGATTGAGTACTTTCGGATTACATGCCTACGATACCGTTTGGTTGCTTGCTCATGCAATAAACGCATTTCTTAATGAAGGGGGAAATCTCTCATTTTCAAATCACTCAAAGTTATCCGGGGCATACGATGGAACTCTGAATCTTAATTCTATGAGCATCTTTGATGGTGGGAAGTTACTAGTGAACAAAATCTTAGAAGCGAAATTTACTGGAATAACAGGCTTGGTTGAGTTTACTTCAGATAGGAACCTAGTTCGTCCAGCATTCGAAGTAATCAATATAATTGGCACGGGAGTTAGGAGAATTGGTTATTGGTCTAATTATTCAGGTCTATCAATATTGCCTCCTGAAATACTGTACTCGAAACCGCCTAATCGTTCCAGTTCAAATCAAAAGCTGCACGATGTAGTATGGCCTGGACAGGCAACACAGAAACCTCGTGGGTGGGCATTTCCGAGCAGTGGAAGACATTTGAGAATTGGAGTCCCAAAACGAGTGAGTTATCAAGAATTTGTCTCACAGGTAGAAGGCACTGACATGTTCACTGGTTACTGCGTTGATGTCTTCACTGCAGCATCCAACTTGTTGCCTTATGCGGTCCCGTATAAGTTAATATCATATGGAGATGGCCATTCAAATCCAAGCGGCACTGAGCTTATTCGTTTAATAACAGCAGGGGTCTTTGATGCAGCTATAGGTGATATTGCAATAATCACCAATCGGACACGGATGGCAGATTTTACGCAACCATTCATCGAGTCTGGCTTGGTAGTTGTAGCCCCCGTCAGGAAGTCGAATTCGAGTGCTTGGGCTTTTTTACAGCCATTCACTCCAAAGATGTGGTGTGTTACTGCTGTTTCTTTTCTCATAGTAGGAGCAGTCATTTGGATTTTGGAGCATAGGATGAATGACGAATTCCGAGGTCCTCCCAAGAGACAAGTTATCACTATGCTATGGTTCAGCTTTTCAACTCTATTCTTTTCCCATAGGGAAAACACAGTCAGTAGCCTCGGTCGCCTGGTGTTAATCATATGGTTATTTGTTGTTCTCATTATCAACTCAAGCTACACAGCAAGCTTGACCTCTATCCTTACAGTGCAACAACTTTACTCTACCGTTAAAGGGATCGAAACCCTGGTTTCGAGCGATGATCCAATTGGCTACCAGCAGGGCTCATTTGCTCGAAATTACTTGATCGAGGAACTTGGCATCCATGAGTCCAGACTTGTTCCACTCATCTCAGCAGAAGACTATGTCAAAGCCTTGAACGATGGTCCAAAGAATCACGGTGTTGCTGCCATTATTGACGAGCGCGCATATGTTGAACTCTTCCTATCAACGCATTGTGAATACAGTATTATTGGTCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGGGACTCCCCTTTGGCAGTTGACATGTCCACAGCCATTCTGAAACTGTCTGAAAATGGTGATCTTCAAAGAATCCACGATAAATGGCTGATGAAAAGTGCCTGCACTTCACCAACCTCCAAAATTGAGGTGGACCGGCTTCAACTCAAGAGTTTTTGGGGACTTTTTCTAATGAGTGGTTTAGCCTGCTTGCTTGCTCTGTTGATATACCTCTTTCTAATGCTGCGCCAGTACAGCAAGCATTACTCTGAAGACGAGTCTACCGTGCGCAGCACTCGTTCTGCAAGCCTACAGAGGTTTCTTTCTTTTGCAGATGAAAAGGAAGAGGTAATCGAAAGCCGATCCAAGAGAAGACAGATGGAGATGGGATCGATTCGGAGCATGGGTGAAGAAAATTCCATCGGCAGTTCCAGGACACTTTCTCATGGTGATGCTGCCGGTGTTGATGCATGA 2796 43.53 MSFVCILLLMLFFNGSSSNGDSTNASTRPGAVKIGALFSFKSMIGRVAKVAVEAAVQDVNSDPSVLGGTTLELAFHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFLRTSQNDLFQMAAVAEIVDYYDWREVIAIFVDDDHGRNGIAALGDKLNEKRCKISFKVPLRPDASRDEVTDALVKVSFTESRILIVHTYETTGMVVLDVAQYLGLTGAGYVWIATNWLSSLLDTNSPLPSDSIEHIQGVITLRIYTPDSALKRNFVSRWTNLTSEKSTSGPRGLSTFGLHAYDTVWLLAHAINAFLNEGGNLSFSNHSKLSGAYDGTLNLNSMSIFDGGKLLVNKILEAKFTGITGLVEFTSDRNLVRPAFEVINIIGTGVRRIGYWSNYSGLSILPPEILYSKPPNRSSSNQKLHDVVWPGQATQKPRGWAFPSSGRHLRIGVPKRVSYQEFVSQVEGTDMFTGYCVDVFTAASNLLPYAVPYKLISYGDGHSNPSGTELIRLITAGVFDAAIGDIAIITNRTRMADFTQPFIESGLVVVAPVRKSNSSAWAFLQPFTPKMWCVTAVSFLIVGAVIWILEHRMNDEFRGPPKRQVITMLWFSFSTLFFSHRENTVSSLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSTVKGIETLVSSDDPIGYQQGSFARNYLIEELGIHESRLVPLISAEDYVKALNDGPKNHGVAAIIDERAYVELFLSTHCEYSIIGQEFTKNGWGFAFQRDSPLAVDMSTAILKLSENGDLQRIHDKWLMKSACTSPTSKIEVDRLQLKSFWGLFLMSGLACLLALLIYLFLMLRQYSKHYSEDESTVRSTRSASLQRFLSFADEKEEVIESRSKRRQMEMGSIRSMGEENSIGSSRTLSHGDAAGVDA 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35570764 35574375 + evm.model.ptg000014l.490 HCH14g0718 558621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0718 931 Pfam Receptor family ligand binding region 49 409 IPR001828 -
HCH14g0718 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 885 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH14g0718 931 FunFam Glutamate receptor 147 304 - -
HCH14g0718 931 PIRSF IGluLR_plant 1 926 IPR017103 -
HCH14g0718 931 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
HCH14g0718 931 SUPERFAMILY Periplasmic binding protein-like I 26 463 IPR028082 -
HCH14g0718 931 CDD PBP1_GABAb_receptor_plant 33 425 IPR044440 -
HCH14g0718 931 Gene3D - 50 399 - -
HCH14g0718 931 Gene3D - 582 701 - -
HCH14g0718 931 FunFam Glutamate receptor 708 815 - -
HCH14g0718 931 FunFam Glutamate receptor 466 582 - -
HCH14g0718 931 Gene3D - 774 810 - -
HCH14g0718 931 CDD GluR_Plant 471 811 - -
HCH14g0718 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
HCH14g0718 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
HCH14g0718 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
HCH14g0718 931 Gene3D - 147 424 - -
HCH14g0718 931 Gene3D - 466 581 - -
HCH14g0718 931 SMART GluR_14 470 813 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH14g0718 931 Pfam Ligand-gated ion channel 592 844 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH14g0718 931 FunFam Glutamate receptor 582 712 - -
HCH14g0718 931 Pfam Ligated ion channel L-glutamate- and glycine-binding site 486 573 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH14g0718 931 Gene3D - 742 773 - -
HCH14g0718 931 MobiDBLite consensus disorder prediction 893 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0047 HCH-Chr12:243662 HCH14g0718 HCH-Chr14:35570764 0.00E+00 dispersed
HCH14g0718 HCH-Chr14:35570764 HCH2g0742 HCH-Chr2:51087788 1.20E-292 dispersed
HCH14g0718 HCH-Chr14:35570764 HCH7g0393 HCH-Chr7:2827069 3.70E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0718 K05387 - csv:101213408 1511.89