Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0730 ATGGAACCCACAAATGGAAGTAATGCGCCCAGCAGCAACCCCAATCTAGCCTCAAAACAACGATTGCGATGGACAAACGAACTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCAAAAGGCGTCCTTAGAGTAATGGGGGTTCAAGGTTTAACAATATACCACGTCAAGAGCCATCTACAGAAATATCGGCTCGCAAAATACCTTCCCGATTCTTCCTCTGATGGAAAAAAAGCTGACAAGAAGGATTCTAGTGACATTCTTTCAAATATGGATGGCTCCTCTGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGATTGCATGAACAATTAGAGGTGCAGAGACAGTTGCAGTTACGGATTGAGGCGCAAGGCAAATACCTAAAGAAGATAATTGAAGAGCAACAAAAACTCAGTGGGGTATTTTCAGGAGGTTCAGTTGCTTGCTTTTCAGCTCCTGCTTCAGGTGACAATCCAGAAACCGATAAGAATGACCCGCCAACACCTGCCCCAACCTCCGAGTCCCCTCGCCAAGAGAGAGCTTTAAAGGAACATGCACAAGCCAAGAGTGTTTCTGTTGATGACTCTTTCTCATCTCATCACGAACCTTTGACACCAGATTCCGGTTGCCATGTCAGTTCGAATGAGACCCTGAGGCCAGCAAAGAAGCAACGGCAGTGCAGGGATGGAGCATATGTCAAGTCAGAGATCGGATTTGCACACCAGATACTGGAGTCAAGTTTAAACTCCACTTACAAAGAACCAGAGCCTGTTTTTCCAGCCAGGGAAAAGTTTGATCCCAAGTCGGGAATATCGATTGGGGATGATGATCGATAA 879 46.08 MEPTNGSNAPSSNPNLASKQRLRWTNELHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSSDILSNMDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVFSGGSVACFSAPASGDNPETDKNDPPTPAPTSESPRQERALKEHAQAKSVSVDDSFSSHHEPLTPDSGCHVSSNETLRPAKKQRQCRDGAYVKSEIGFAHQILESSLNSTYKEPEPVFPAREKFDPKSGISIGDDDR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35632130 35634580 - evm.model.ptg000014l.478 HCH14g0730 558633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0730 292 MobiDBLite consensus disorder prediction 79 95 - -
HCH14g0730 292 Coils Coil 108 128 - -
HCH14g0730 292 Pfam Myb-like DNA-binding domain 21 72 IPR001005 -
HCH14g0730 292 MobiDBLite consensus disorder prediction 205 234 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 271 292 - -
HCH14g0730 292 FunFam Myb family transcription factor 18 76 - -
HCH14g0730 292 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
HCH14g0730 292 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
HCH14g0730 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
HCH14g0730 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677(InterPro)
HCH14g0730 292 MobiDBLite consensus disorder prediction 79 102 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 260 292 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 166 241 - -
HCH14g0730 292 Gene3D - 18 77 - -
HCH14g0730 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 15 234 IPR046955 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0730 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0650 HCH-Chr11:28513017 HCH14g0730 HCH-Chr14:35632130 1.30E-44 dispersed
HCH14g0730 HCH-Chr14:35632130 HCH5g0122 HCH-Chr5:738127 8.30E-30 dispersed
HCH14g0730 HCH-Chr14:35632130 HCH14g0731 HCH-Chr14:35637900 4.10E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32964 PF00249 Myb_DNA-binding 2.70E-08 CL0123 HCH TF