Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0730 ATGGAACCCACAAATGGAAGTAATGCGCCCAGCAGCAACCCCAATCTAGCCTCAAAACAACGATTGCGATGGACAAACGAACTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCAAAAGGCGTCCTTAGAGTAATGGGGGTTCAAGGTTTAACAATATACCACGTCAAGAGCCATCTACAGAAATATCGGCTCGCAAAATACCTTCCCGATTCTTCCTCTGATGGAAAAAAAGCTGACAAGAAGGATTCTAGTGACATTCTTTCAAATATGGATGGCTCCTCTGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGATTGCATGAACAATTAGAGGTGCAGAGACAGTTGCAGTTACGGATTGAGGCGCAAGGCAAATACCTAAAGAAGATAATTGAAGAGCAACAAAAACTCAGTGGGGTATTTTCAGGAGGTTCAGTTGCTTGCTTTTCAGCTCCTGCTTCAGGTGACAATCCAGAAACCGATAAGAATGACCCGCCAACACCTGCCCCAACCTCCGAGTCCCCTCGCCAAGAGAGAGCTTTAAAGGAACATGCACAAGCCAAGAGTGTTTCTGTTGATGACTCTTTCTCATCTCATCACGAACCTTTGACACCAGATTCCGGTTGCCATGTCAGTTCGAATGAGACCCTGAGGCCAGCAAAGAAGCAACGGCAGTGCAGGGATGGAGCATATGTCAAGTCAGAGATCGGATTTGCACACCAGATACTGGAGTCAAGTTTAAACTCCACTTACAAAGAACCAGAGCCTGTTTTTCCAGCCAGGGAAAAGTTTGATCCCAAGTCGGGAATATCGATTGGGGATGATGATCGATAA 879 46.08 MEPTNGSNAPSSNPNLASKQRLRWTNELHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSSDILSNMDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVFSGGSVACFSAPASGDNPETDKNDPPTPAPTSESPRQERALKEHAQAKSVSVDDSFSSHHEPLTPDSGCHVSSNETLRPAKKQRQCRDGAYVKSEIGFAHQILESSLNSTYKEPEPVFPAREKFDPKSGISIGDDDR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35632130 35634580 - evm.model.ptg000014l.478 HCH14g0730 558633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0730 292 MobiDBLite consensus disorder prediction 79 95 - -
HCH14g0730 292 Coils Coil 108 128 - -
HCH14g0730 292 Pfam Myb-like DNA-binding domain 21 72 IPR001005 -
HCH14g0730 292 MobiDBLite consensus disorder prediction 205 234 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 271 292 - -
HCH14g0730 292 FunFam Myb family transcription factor 18 76 - -
HCH14g0730 292 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
HCH14g0730 292 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
HCH14g0730 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
HCH14g0730 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677(InterPro)
HCH14g0730 292 MobiDBLite consensus disorder prediction 79 102 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 260 292 - -
HCH14g0730 292 MobiDBLite consensus disorder prediction 166 241 - -
HCH14g0730 292 Gene3D - 18 77 - -
HCH14g0730 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 15 234 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0650 HCH-Chr11:28513017 HCH14g0730 HCH-Chr14:35632130 1.30E-44 dispersed
HCH14g0730 HCH-Chr14:35632130 HCH5g0122 HCH-Chr5:738127 8.30E-30 dispersed
HCH14g0730 HCH-Chr14:35632130 HCH14g0731 HCH-Chr14:35637900 4.10E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32964 PF00249 Myb_DNA-binding 2.70E-08 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0730 - - - 0.0