Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0789 ATGGAAGGAGGGTCTAATGGAACTTCTTCTGGAATGATGAATTTTGGAGATCAAAATAGTAATGGGTTATGTTCCATGATGATGATGATGCCTCTTATGACTAATCCCCATCATCACCATCACCATGATGCTGATGCATGTAGTCCATTTCTTTCCCTTCCAAATCCTACTACCAATAATTACAATCATAACACTAGCAGTGGTTCTTCGTTAATGCTAGAAGATCACAACCCTAATAATAATAATAACAACCCTATTTGTTACTTCATGGAAGATAACAACAACAATAATAATGCTTCTTCCTCTTCTTCTGATGCTGTGAAAGCTAAGGTCATGGCTCATCCTCATTATCACCGCCTCTTAGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTAGAAGAAGCGTGTGCGACAGCGGCGTCGATAAGTACGTCGGGTACGGGTTGTCTTGGCGAAGATCCTGCTTTGGATCAATTCATGGAAGCTTACTGTGAGATGTTAATGAAATATGAGCAAGAACTTTCTAAACCCTTCAGGGATGCCATGCTTTTTCTTCAACGAATCGAGTGCCAATTCAAAGCACTCACTATTTCTTCCTCAGATGCTGCTTGCGGTGAGGCTTTTGATAGGCATGGATCATCTGAAGAAGAAGTCGACATCAATGGCAACTCTGTTGATCCCCAAGCCGAAGATCGGGAACTGAAGGGTCAGCTTCTTCGCAAATACAGTGGATACTTGGGAAGTCTTAAACAAGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTACCCAAGGAGGCTAGACAACAGCTGCTGGATTGGTGGAGCAGACACTACAAATGGCCTTATCCATCAGAATCTCAGAAACTGGCTCTAGCTCAATCGACCGGTTTAGATCAGAAGCAAATCAACAACTGGTTCATAAATCAAAGGAAAAGACACTGGAAGCCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCCCATCCACAGTATTACATGGACAGTGTAATGGGCAATCCTTTTCCCTTGGACATCTCTCACACTCTACTCTAA 1080 43.52 MEGGSNGTSSGMMNFGDQNSNGLCSMMMMMPLMTNPHHHHHHDADACSPFLSLPNPTTNNYNHNTSSGSSLMLEDHNPNNNNNNPICYFMEDNNNNNNASSSSSDAVKAKVMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACATAASISTSGTGCLGEDPALDQFMEAYCEMLMKYEQELSKPFRDAMLFLQRIECQFKALTISSSDAACGEAFDRHGSSEEEVDINGNSVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDSVMGNPFPLDISHTLL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35952103 35955523 + evm.model.ptg000014l.419 HCH14g0789 558692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0789 359 CDD homeodomain 273 325 IPR001356 GO:0003677(InterPro)
HCH14g0789 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 331 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g0789 359 SMART HOX_1 263 328 IPR001356 GO:0003677(InterPro)
HCH14g0789 359 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677(InterPro)
HCH14g0789 359 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677(InterPro)
HCH14g0789 359 SUPERFAMILY Homeodomain-like 263 337 IPR009057 -
HCH14g0789 359 FunFam Homeobox protein knotted-1-like 2 266 328 - -
HCH14g0789 359 ProSitePatterns 'Homeobox' domain signature. 299 322 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH14g0789 359 Pfam ELK domain 241 262 IPR005539 GO:0003677(InterPro)
HCH14g0789 359 SMART KNOX2_2 154 205 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH14g0789 359 Pfam KNOX2 domain 157 204 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH14g0789 359 SMART KNOX1_2 105 149 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH14g0789 359 Gene3D - 266 328 - -
HCH14g0789 359 Pfam KNOX1 domain 106 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH14g0789 359 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0789 359 SMART ELK_2 241 262 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0525 HCH-Chr12:3068237 HCH14g0789 HCH-Chr14:35952103 1.00E-75 dispersed
HCH14g0789 HCH-Chr14:35952103 HCH4g0559 HCH-Chr4:3620026 2.30E-69 dispersed
HCH14g0789 HCH-Chr14:35952103 HCH2g0714 HCH-Chr2:50858052 7.20E-84 wgd
HCH14g0789 HCH-Chr14:35952103 HCH7g0260 HCH-Chr7:1790952 4.80E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32969 PF03791 KNOX2 5.80E-20 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0789 - - - 0.0