Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0796 ATGGCCTTCCAACTCCACTTCCTAATGCTATTTTCATGCTTTCTATTAACCATTCATCCATCTCTTCAGAAACCTTCCTCAGGCAAAAACTCTACTTCCATTACTGACCCTGATAGCCTAACCTTCAATGTCATTGACGAGTGCTGGCGTACCAAGTCCAACTGGGCCGCCGATCGACGCGCCTTGGCCAACTGTGCTGTAGGGTTTGGCAACGACGCGGTCGGAGGGAAGTTCGGAGCAATATACGTGGTCACAGATCCTTCCGATGACCCCGTAAATCCCAAGCGCGGTACACTGCGTTTTGGTGTGATTCAGCCTCAGCCATTATGGATCACTTTCGCAAAAGACATGAGCATCACACTAACGAGGGAACTGATGGTGACCAGTTTCAAGACTATAGATGGGAGAGGAGCCAAAGTGGAGATTGCATATGGGGCATGCATAACTATTCAAGATGTGAGCCATGTGATAATCCATGGGATTAGTATCCACGACTGTAAGCCGGGGAAGCCGGGGCTCGTTCGGAGCAGCACGACTCATTGCGGGGAACGACAAGTATCGGATGGAGATGGCATCTCCATATTTACGTCTTCACATATTTGGATCGACCATTGCTTTCTTTCTCGTTGCACTGATGGCCTCATTGATGTAATCCATGCTTCAACAGCAGTCACTATCTCCAACAACTACTTCTCCCAGCATGACAAAGTGATTCTTCTTGGACACAATGATGCATTTACAGCTGATAAAATCATGAAAGTTACTTTAGCTTTTAATAGGTTTGGAGCTGGCCTTGTTCAAAGAATGCCGAGGGTTAGATATGGGTACGCCCATGTTGCCAATAACTGGTATGATAAGTGGGAGATGTATGCAATGGGTGGCAGTGCAGATCCAACCATCTTCAGTGAAGGGAACTACTTCATGGCTCCTTATGAGCAATGTTCAAAGCAGGTTACAAAGAGAGAGGTTGATGGGGGTTGGAAGAATTGGAAATGGAGGTCTTCAAATGATGTATTTTTGAATGGGGCTTATTTTATCCCATCTGGTTGGGGAACTTGCTCACCAATATACACTAAAGCTCAATCATTTTCTGTTGCTCATGGCTCTTTGGTTCCTGTTTTGACTTCTGATGCAGGCCCTTTAACTTGTGTCAATGGTAAAGCTTGTTGA 1170 45.81 MAFQLHFLMLFSCFLLTIHPSLQKPSSGKNSTSITDPDSLTFNVIDECWRTKSNWAADRRALANCAVGFGNDAVGGKFGAIYVVTDPSDDPVNPKRGTLRFGVIQPQPLWITFAKDMSITLTRELMVTSFKTIDGRGAKVEIAYGACITIQDVSHVIIHGISIHDCKPGKPGLVRSSTTHCGERQVSDGDGISIFTSSHIWIDHCFLSRCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDAFTADKIMKVTLAFNRFGAGLVQRMPRVRYGYAHVANNWYDKWEMYAMGGSADPTIFSEGNYFMAPYEQCSKQVTKREVDGGWKNWKWRSSNDVFLNGAYFIPSGWGTCSPIYTKAQSFSVAHGSLVPVLTSDAGPLTCVNGKAC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 35985595 35987187 + evm.model.ptg000014l.412 HCH14g0796 558699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0796 389 Gene3D - 42 382 IPR012334 -
HCH14g0796 389 SMART amb_all 116 313 IPR002022 -
HCH14g0796 389 SUPERFAMILY Pectin lyase-like 43 380 IPR011050 -
HCH14g0796 389 Pfam Pectate lyase 125 307 IPR002022 -
HCH14g0796 389 PANTHER PECTATE LYASE 18-RELATED 8 386 IPR045032 GO:0030570(InterPro)
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
HCH14g0796 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0796 HCH-Chr14:35985595 HCH5g0167 HCH-Chr5:965687 1.50E-119 dispersed
HCH14g0796 HCH-Chr14:35985595 HCH3g0520 HCH-Chr3:3431045 3.50E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0796 K01728 - csv:101210816 597.045