Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0796 | ATGGCCTTCCAACTCCACTTCCTAATGCTATTTTCATGCTTTCTATTAACCATTCATCCATCTCTTCAGAAACCTTCCTCAGGCAAAAACTCTACTTCCATTACTGACCCTGATAGCCTAACCTTCAATGTCATTGACGAGTGCTGGCGTACCAAGTCCAACTGGGCCGCCGATCGACGCGCCTTGGCCAACTGTGCTGTAGGGTTTGGCAACGACGCGGTCGGAGGGAAGTTCGGAGCAATATACGTGGTCACAGATCCTTCCGATGACCCCGTAAATCCCAAGCGCGGTACACTGCGTTTTGGTGTGATTCAGCCTCAGCCATTATGGATCACTTTCGCAAAAGACATGAGCATCACACTAACGAGGGAACTGATGGTGACCAGTTTCAAGACTATAGATGGGAGAGGAGCCAAAGTGGAGATTGCATATGGGGCATGCATAACTATTCAAGATGTGAGCCATGTGATAATCCATGGGATTAGTATCCACGACTGTAAGCCGGGGAAGCCGGGGCTCGTTCGGAGCAGCACGACTCATTGCGGGGAACGACAAGTATCGGATGGAGATGGCATCTCCATATTTACGTCTTCACATATTTGGATCGACCATTGCTTTCTTTCTCGTTGCACTGATGGCCTCATTGATGTAATCCATGCTTCAACAGCAGTCACTATCTCCAACAACTACTTCTCCCAGCATGACAAAGTGATTCTTCTTGGACACAATGATGCATTTACAGCTGATAAAATCATGAAAGTTACTTTAGCTTTTAATAGGTTTGGAGCTGGCCTTGTTCAAAGAATGCCGAGGGTTAGATATGGGTACGCCCATGTTGCCAATAACTGGTATGATAAGTGGGAGATGTATGCAATGGGTGGCAGTGCAGATCCAACCATCTTCAGTGAAGGGAACTACTTCATGGCTCCTTATGAGCAATGTTCAAAGCAGGTTACAAAGAGAGAGGTTGATGGGGGTTGGAAGAATTGGAAATGGAGGTCTTCAAATGATGTATTTTTGAATGGGGCTTATTTTATCCCATCTGGTTGGGGAACTTGCTCACCAATATACACTAAAGCTCAATCATTTTCTGTTGCTCATGGCTCTTTGGTTCCTGTTTTGACTTCTGATGCAGGCCCTTTAACTTGTGTCAATGGTAAAGCTTGTTGA | 1170 | 45.81 | MAFQLHFLMLFSCFLLTIHPSLQKPSSGKNSTSITDPDSLTFNVIDECWRTKSNWAADRRALANCAVGFGNDAVGGKFGAIYVVTDPSDDPVNPKRGTLRFGVIQPQPLWITFAKDMSITLTRELMVTSFKTIDGRGAKVEIAYGACITIQDVSHVIIHGISIHDCKPGKPGLVRSSTTHCGERQVSDGDGISIFTSSHIWIDHCFLSRCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDAFTADKIMKVTLAFNRFGAGLVQRMPRVRYGYAHVANNWYDKWEMYAMGGSADPTIFSEGNYFMAPYEQCSKQVTKREVDGGWKNWKWRSSNDVFLNGAYFIPSGWGTCSPIYTKAQSFSVAHGSLVPVLTSDAGPLTCVNGKAC | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 35985595 | 35987187 | + | evm.model.ptg000014l.412 | HCH14g0796 | 558699 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0796 | 389 | Gene3D | - | 42 | 382 | IPR012334 | - | |
HCH14g0796 | 389 | SMART | amb_all | 116 | 313 | IPR002022 | - | |
HCH14g0796 | 389 | SUPERFAMILY | Pectin lyase-like | 43 | 380 | IPR011050 | - | |
HCH14g0796 | 389 | Pfam | Pectate lyase | 125 | 307 | IPR002022 | - | |
HCH14g0796 | 389 | PANTHER | PECTATE LYASE 18-RELATED | 8 | 386 | IPR045032 | GO:0030570(InterPro) | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 188 | 209 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 268 | 287 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 88 | 113 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 124 | 140 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 65 | 82 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 290 | 309 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 330 | 354 | IPR018082 | - | |
HCH14g0796 | 389 | PRINTS | Pollen allergen Amb family signature | 360 | 383 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0796 | HCH-Chr14:35985595 | HCH5g0167 | HCH-Chr5:965687 | 1.50E-119 | dispersed | |
HCH14g0796 | HCH-Chr14:35985595 | HCH3g0520 | HCH-Chr3:3431045 | 3.50E-169 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0796 | K01728 | - | csv:101210816 | 597.045 |