Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0806 ATGGGAAAGAAGAAAGTGACTCTGAAAACTGAAGGCTCTAATGTTACATTGGATAATGGGTTGTTAAAAGTGACGATATCGAATCCGCAAGGTCAAGTAAGTGGCATCAAGTATGGAGGAATGGATAACTTGTTGGATGTTAAATCAAGTGAATCTAAAAGAGGATACTGGGATATCAACTGGAGTTGGCCCGGAGGGAAGGACAGATATGAACCACTTAAAGGATCTGAATATAATGTAATTCATGCAAGCGAAGACTGCGTCGAGGTATCGTTCAGAAAAGTTTGCAATCCATCAAGTCATGGCAACAAACTACCACTTGGAGTAGATATAAGGTACATAATGAGGACCGGTGTTTCAGGCTTCTACTGTTATGCAATCTACGAGCATCTTGCAGAATGTCGCGCATTCGATCTTGCTCAGACGAGGATGGTATTTAAATTGCGACGAGAGGAGTTCCACTACATGGCGATTTCGGATGAGAAGCAAAGAATAATGCCAATGCCGGAGGATTTGCTTCAAGGCAGAGGTGAAGAACTAATTGTACCTGAGTCAGTTTTGCTTGTAAATCCTATTAATCCTGATCTTAAAGGAGAGGTAGATGATAAGTACCAGTACTCAATGGACAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCTAGCCCAAATGTAGGTTTCTGGATAGTTTTCCCCAGCCATGAGTTTCGAAATGGTGGTCCTACTAAGCAAAATCTAACAGTCCACACTGGCCCCACCTGCCTTGCGATGTTTCATGGAACCCATTACATTGGAGAGAATATACTGACACACTTGAAAGAGGGAAAGACATGGAGGAAGGTGCTTGGTCCTTTTCTTGTATACCTAAACTCCACGCCGGATATATCAGATGCACACAATTTATGGTTTGATGCAAAAAATCAGAAAATGCTGGAGGAGGCAGCATGGCCTTATGATTTCGTGTCTTCACCCTATTATTTCATGGAAAATGAACGTGGTTCGGTTTCAGGAAGTCTATTAGTCCAAGACAGGTATGTTTCAAGTTCCCCCATCCCCGCTAGAGGTGCGTATATCGGTTTATCCGCTGCTAGAAGTGAAGGCGCCTGGCAAATAGAGAGCAAGGAATATCAATTTTGGGTACAAACAGATTCCAATGGAGATTTCACCATCAGAAATGTTATTCCTGGAGTGTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTGACAAAGCACTGGTAACAACATTTGCAGGAACGCATACACAGCTCGGCAATCTGACCTACAGTCCCCTCAGAGACGGTCCCACGTTATGGGAGATCGGCTTTCCTGATCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCAATGTATGCCAACAAGTTATTTCTTCACAGCCCTGAAAAGTTCAGGCAATATGGTTTGTGGGAGAGATATAGTGATTTACATCCACAAAATGACCAAGTTTTCACTGTAGGCATCAATGATCCAAAGAAAGACTGGTTCTTTGCTCATGTTTGCAGAAGAGGGGAAGATGGTCGGTATGTTGCGACTACCTGGACGATTAAGTTCAATTTGACATCATTAACCAGCGGAATTTACAGGCTGAGATTGGCCATTGCATCTGCAACACGCTCAGACTTGGAGATTCATGTCAACTCCATGGGGTTGGAGAGTCTGGTTTTCCAGGTGATGAATCTGGGAATGGATAACGCGGTTTGTCGACATGGGATTCATGGACTGTATCGGCTTTACAGCATCCATATTCCATATTCGTTGCTTGTTATGGGAGATAACTACATATTTCTCACACAGGCAAGACGTGGGGATTCGCTCTGTGGAATTTTCTATGATTATTTAAGATTGGAAGCTCCCGAGACTCCATGA 1902 43.01 MGKKKVTLKTEGSNVTLDNGLLKVTISNPQGQVSGIKYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYEPLKGSEYNVIHASEDCVEVSFRKVCNPSSHGNKLPLGVDIRYIMRTGVSGFYCYAIYEHLAECRAFDLAQTRMVFKLRREEFHYMAISDEKQRIMPMPEDLLQGRGEELIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNVGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGENILTHLKEGKTWRKVLGPFLVYLNSTPDISDAHNLWFDAKNQKMLEEAAWPYDFVSSPYYFMENERGSVSGSLLVQDRYVSSSPIPARGAYIGLSAARSEGAWQIESKEYQFWVQTDSNGDFTIRNVIPGVYGLHGWVPGFIGDYLDKALVTTFAGTHTQLGNLTYSPLRDGPTLWEIGFPDRTANSFYVPDVNPMYANKLFLHSPEKFRQYGLWERYSDLHPQNDQVFTVGINDPKKDWFFAHVCRRGEDGRYVATTWTIKFNLTSLTSGIYRLRLAIASATRSDLEIHVNSMGLESLVFQVMNLGMDNAVCRHGIHGLYRLYSIHIPYSLLVMGDNYIFLTQARRGDSLCGIFYDYLRLEAPETP 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36044308 36047848 + evm.model.ptg000014l.402 HCH14g0806 558709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0806 633 Gene3D - 438 628 - -
HCH14g0806 633 Pfam Polysaccharide lyase family 4, domain III 440 627 IPR029411 -
HCH14g0806 633 CDD RGL4_C 442 628 - -
HCH14g0806 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 631 IPR051850 -
HCH14g0806 633 SUPERFAMILY Galactose mutarotase-like 7 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH14g0806 633 SUPERFAMILY Starch-binding domain-like 330 422 IPR013784 GO:0030246(InterPro)
HCH14g0806 633 CDD RGL4_M 331 430 IPR029413 -
HCH14g0806 633 Gene3D - 6 306 IPR014718 GO:0030246(InterPro)
HCH14g0806 633 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
HCH14g0806 633 Pfam Polysaccharide lyase family 4, domain II 353 427 IPR029413 -
HCH14g0806 633 Gene3D - 328 427 - -
HCH14g0806 633 SUPERFAMILY Galactose-binding domain-like 437 628 IPR008979 -
HCH14g0806 633 CDD RGL4_N 8 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0709 HCH-Chr12:4407137 HCH14g0806 HCH-Chr14:36044308 2.50E-195 dispersed
HCH14g0431 HCH-Chr14:33339770 HCH14g0806 HCH-Chr14:36044308 2.70E-188 dispersed
HCH14g0806 HCH-Chr14:36044308 HCH4g0262 HCH-Chr4:1643091 2.70E-198 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0806 K18195 - csv:101220336 1114.37